Hasil Pencarian - Jonathan M. Monk

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  1. 1
    Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity

    Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity oleh Jason C. Hyun, Jonathan M. Monk, Bernhard O. Palsson

    Diterbitkan 2022-01-01
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  2. 2
    Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens.

    Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens. oleh Jason C Hyun, Erol S Kavvas, Jonathan M Monk, Bernhard O Palsson

    Diterbitkan 2020-03-01
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  3. 3
    Rapid resistance development to three antistaphylococcal therapies in antibiotic-tolerant staphylococcus aureus bacteremia

    Rapid resistance development to three antistaphylococcal therapies in antibiotic-tolerant staphylococcus aureus bacteremia oleh Christopher R. Miller, Jonathan M. Monk, Richard Szubin, Andrew D. Berti

    Diterbitkan 2021-01-01
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  4. 4
    Rapid resistance development to three antistaphylococcal therapies in antibiotic-tolerant staphylococcus aureus bacteremia.

    Rapid resistance development to three antistaphylococcal therapies in antibiotic-tolerant staphylococcus aureus bacteremia. oleh Christopher R Miller, Jonathan M Monk, Richard Szubin, Andrew D Berti

    Diterbitkan 2021-01-01
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  5. 5
    A biochemically-interpretable machine learning classifier for microbial GWAS

    A biochemically-interpretable machine learning classifier for microbial GWAS oleh Erol S. Kavvas, Laurence Yang, Jonathan M. Monk, David Heckmann, Bernhard O. Palsson

    Diterbitkan 2020-05-01
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  6. 6
    Systems Biology and Pangenome of <italic toggle="yes">Salmonella</italic> O-Antigens

    Systems Biology and Pangenome of <italic toggle="yes">Salmonella</italic> O-Antigens oleh Yara Seif, Jonathan M. Monk, Henrique Machado, Erol Kavvas, Bernhard O. Palsson

    Diterbitkan 2019-08-01
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  7. 7
    Improved Dried Blood Spot-Based Metabolomics: A Targeted, Broad-Spectrum, Single-Injection Method

    Improved Dried Blood Spot-Based Metabolomics: A Targeted, Broad-Spectrum, Single-Injection Method oleh Kefeng Li, Jane C. Naviaux, Jonathan M. Monk, Lin Wang, Robert K. Naviaux

    Diterbitkan 2020-02-01
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  8. 8
    iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE

    iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE oleh Charles J. Norsigian, Erol Kavvas, Yara Seif, Bernhard O. Palsson, Jonathan M. Monk

    Diterbitkan 2018-04-01
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  9. 9
    Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species

    Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species oleh Jason C. Hyun, Jonathan M. Monk, Richard Szubin, Ying Hefner, Bernhard O. Palsson

    Diterbitkan 2023-11-01
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  10. 10
    Pangenome analysis of Enterobacteria reveals richness of secondary metabolite gene clusters and their associated gene sets

    Pangenome analysis of Enterobacteria reveals richness of secondary metabolite gene clusters and their associated gene sets oleh Omkar S. Mohite, Colton J. Lloyd, Jonathan M. Monk, Tilmann Weber, Bernhard O. Palsson

    Diterbitkan 2022-09-01
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  11. 11
    Impact of insertion sequences on convergent evolution of Shigella species.

    Impact of insertion sequences on convergent evolution of Shigella species. oleh Jane Hawkey, Jonathan M Monk, Helen Billman-Jacobe, Bernhard Palsson, Kathryn E Holt

    Diterbitkan 2020-07-01
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  12. 12
    Comprehensive whole genome sequencing with hybrid assembly of multi-drug resistant Candida albicans isolate causing cerebral abscess

    Comprehensive whole genome sequencing with hybrid assembly of multi-drug resistant Candida albicans isolate causing cerebral abscess oleh Monika Kumaraswamy, Alison Coady, Richard Szubin, Thomas CS Martin, Bernhard Palsson, Victor Nizet, Jonathan M. Monk

    Diterbitkan 2023-01-01
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  13. 13
    Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes

    Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes oleh Nathan Mih, Jonathan M. Monk, Xin Fang, Edward Catoiu, David Heckmann, Laurence Yang, Bernhard O. Palsson

    Diterbitkan 2020-04-01
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  14. 14
    High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies

    High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies oleh Jared T. Broddrick, Richard Szubin, Charles J. Norsigian, Jonathan M. Monk, Bernhard O. Palsson, Mary N. Parenteau

    Diterbitkan 2020-11-01
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  15. 15
    Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens

    Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens oleh Akanksha Rajput, Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M. Monk, Bernhard O. Palsson

    Diterbitkan 2021-02-01
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  16. 16
    High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917

    High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917 oleh Max van ‘t Hof, Omkar S. Mohite, Jonathan M. Monk, Tilmann Weber, Bernhard O. Palsson, Morten O. A. Sommer

    Diterbitkan 2022-12-01
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  17. 17
    A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types.

    A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types. oleh Yara Seif, Jonathan M Monk, Nathan Mih, Hannah Tsunemoto, Saugat Poudel, Cristal Zuniga, Jared Broddrick, Karsten Zengler, Bernhard O Palsson

    Diterbitkan 2019-01-01
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  18. 18
    Estimated Roles of the Carrier and the Bacterial Strain When Methicillin-Resistant Staphylococcus aureus Decolonization Fails: a Case-Control Study

    Estimated Roles of the Carrier and the Bacterial Strain When Methicillin-Resistant Staphylococcus aureus Decolonization Fails: a Case-Control Study oleh Mona Katrine Alberthe Holm, Kristina Melbardis Jørgensen, Kristian Bagge, Peder Worning, Michael Pedersen, Henrik Westh, Jonathan M. Monk, Mette Damkjær Bartels

    Diterbitkan 2022-10-01
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  19. 19
    Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection.

    Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection. oleh Jinyuan Yan, Henri Estanbouli, Chen Liao, Wook Kim, Jonathan M Monk, Rayees Rahman, Mini Kamboj, Bernhard O Palsson, Weigang Qiu, Joao B Xavier

    Diterbitkan 2019-12-01
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  20. 20
    Comparative Genome-Scale Metabolic Modeling of Metallo-Beta-Lactamase–Producing Multidrug-Resistant Klebsiella pneumoniae Clinical Isolates

    Comparative Genome-Scale Metabolic Modeling of Metallo-Beta-Lactamase–Producing Multidrug-Resistant Klebsiella pneumoniae Clinical Isolates oleh Charles J. Norsigian, Heba Attia, Richard Szubin, Aymen S. Yassin, Aymen S. Yassin, Bernhard Ø. Palsson, Ramy K. Aziz, Ramy K. Aziz, Jonathan M. Monk

    Diterbitkan 2019-05-01
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