Search Results - John H Morris

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  1. 1
    clusterMaker2: a major update to clusterMaker, a multi-algorithm clustering app for Cytoscape

    clusterMaker2: a major update to clusterMaker, a multi-algorithm clustering app for Cytoscape by Maija Utriainen, John H. Morris

    Published 2023-04-01
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  2. 2
    Translating desktop success to the web in the cytoscape project

    Translating desktop success to the web in the cytoscape project by Dexter Pratt, Rudolf T. Pillich, John H. Morris

    Published 2023-03-01
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  3. 3
    aMatReader: Importing adjacency matrices via Cytoscape Automation [version 2; referees: 2 approved]

    aMatReader: Importing adjacency matrices via Cytoscape Automation [version 2; referees: 2 approved] by Brett Settle, David Otasek, John H Morris, Barry Demchak

    Published 2018-08-01
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  4. 4
    aMatReader: Importing adjacency matrices via Cytoscape Automation [version 1; referees: 2 approved]

    aMatReader: Importing adjacency matrices via Cytoscape Automation [version 1; referees: 2 approved] by Brett Settle, David Otasek, John H Morris, Barry Demchak

    Published 2018-06-01
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  5. 5
    Copycat Layout: Network layout alignment via Cytoscape Automation [version 1; referees: 2 approved]

    Copycat Layout: Network layout alignment via Cytoscape Automation [version 1; referees: 2 approved] by Brett Settle, David Otasek, John H Morris, Barry Demchak

    Published 2018-06-01
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  6. 6
    Copycat Layout: Network layout alignment via Cytoscape Automation [version 2; referees: 2 approved]

    Copycat Layout: Network layout alignment via Cytoscape Automation [version 2; referees: 2 approved] by Brett Settle, David Otasek, John H Morris, Barry Demchak

    Published 2018-08-01
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  7. 7
    Visualize omics data on networks with Omics Visualizer, a Cytoscape App [version 2; peer review: 2 approved]

    Visualize omics data on networks with Omics Visualizer, a Cytoscape App [version 2; peer review: 2 approved] by Marc Legeay, Nadezhda T. Doncheva, John H. Morris, Lars Juhl Jensen

    Published 2020-06-01
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  8. 8
    Visualize omics data on networks with Omics Visualizer, a Cytoscape App [version 1; peer review: 2 approved]

    Visualize omics data on networks with Omics Visualizer, a Cytoscape App [version 1; peer review: 2 approved] by Marc Legeay, Nadezhda T. Doncheva, John H. Morris, Lars Juhl Jensen

    Published 2020-02-01
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  9. 9
    enhancedGraphics: a Cytoscape app for enhanced node graphics [v1; ref status: indexed, http://f1000r.es/3oj]

    enhancedGraphics: a Cytoscape app for enhanced node graphics [v1; ref status: indexed, http://f1000r.es/3oj] by John H. Morris, Allan Kuchinsky, Thomas E. Ferrin, Alexander R. Pico

    Published 2014-07-01
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  10. 10
    Ten simple rules to create biological network figures for communication.

    Ten simple rules to create biological network figures for communication. by G Elisabeta Marai, Bruno Pinaud, Katja Bühler, Alexander Lex, John H Morris

    Published 2019-09-01
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  11. 11
    Cytoscape Automation: empowering workflow-based network analysis

    Cytoscape Automation: empowering workflow-based network analysis by David Otasek, John H. Morris, Jorge Bouças, Alexander R. Pico, Barry Demchak

    Published 2019-09-01
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  12. 12
    Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.

    Using sequence similarity networks for visualization of relationships across diverse protein superfamilies. by Holly J Atkinson, John H Morris, Thomas E Ferrin, Patricia C Babbitt

    Published 2009-01-01
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  13. 13
    setsApp: Set operations for Cytoscape Nodes and Edges [v1; ref status: indexed, http://f1000r.es/3ml]

    setsApp: Set operations for Cytoscape Nodes and Edges [v1; ref status: indexed, http://f1000r.es/3ml] by John H. Morris, Allan Wu, Nadezhda T. Doncheva, Mario Albrecht, Thomas E Ferrin

    Published 2014-07-01
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  14. 14
    CyAnimator: Simple Animations of Cytoscape Networks [version 2; referees: 2 approved, 1 approved with reservations]

    CyAnimator: Simple Animations of Cytoscape Networks [version 2; referees: 2 approved, 1 approved with reservations] by John H. Morris, Dhameliya Vijay, Steven Federowicz, Alexander R. Pico, Thomas E. Ferrin

    Published 2015-12-01
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  15. 15
    setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz]

    setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges [v2; ref status: indexed, http://f1000r.es/5lz] by John H. Morris, Samad Lotia, Allan Wu, Nadezhda T. Doncheva, Mario Albrecht, Alexander R. Pico, Thomas E Ferrin

    Published 2015-08-01
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  16. 16
    scNetViz: from single cells to networks using Cytoscape [version 1; peer review: 2 approved]

    scNetViz: from single cells to networks using Cytoscape [version 1; peer review: 2 approved] by Krishna Choudhary, Elaine C. Meng, J. Javier Diaz-Mejia, Gary D. Bader, Alexander R. Pico, John H. Morris

    Published 2021-06-01
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  17. 17
    An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.

    An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins. by Angela F Harper, Janelle B Leuthaeuser, Patricia C Babbitt, John H Morris, Thomas E Ferrin, Leslie B Poole, Jacquelyn S Fetrow

    Published 2017-02-01
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  18. 18
    Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data [version 2; peer review: 1 approved, 2 approved with reservations]

    Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data [version 2; peer review: 1 approved, 2 approved with reservations] by J. Javier Diaz-Mejia, Elaine C. Meng, Alexander R. Pico, Sonya A. MacParland, Troy Ketela, Trevor J. Pugh, Gary D. Bader, John H. Morris

    Published 2019-08-01
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  19. 19
    Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data [version 3; peer review: 2 approved, 1 approved with reservations]

    Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data [version 3; peer review: 2 approved, 1 approved with reservations] by J. Javier Diaz-Mejia, Elaine C. Meng, Alexander R. Pico, Sonya A. MacParland, Troy Ketela, Trevor J. Pugh, Gary D. Bader, John H. Morris

    Published 2019-10-01
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  20. 20
    Low-density lipoprotein receptor-related protein 1 (LRP1) is a novel receptor for apolipoprotein A4 (APOA4) in adipose tissue

    Low-density lipoprotein receptor-related protein 1 (LRP1) is a novel receptor for apolipoprotein A4 (APOA4) in adipose tissue by Jie Qu, Sarah Fourman, Maureen Fitzgerald, Min Liu, Supna Nair, Juan Oses-Prieto, Alma Burlingame, John H. Morris, W. Sean Davidson, Patrick Tso, Aditi Bhargava

    Published 2021-06-01
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