HLA-check: evaluating HLA data from SNP information by Marc Jeanmougin, Josselin Noirel, Cédric Coulonges, Jean-François Zagury

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Decoys Selection in Benchmarking Datasets: Overview and Perspectives by Manon Réau, Florent Langenfeld, Jean-François Zagury, Nathalie Lagarde, Matthieu Montes

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Large-Scale “OMICS” Studies to Explore the Physiopatholgy of HIV-1 Infection by Sigrid Le Clerc, Sophie Limou, Sophie Limou, Sophie Limou, Jean-François Zagury

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Accurate, scalable and integrative haplotype estimation by Olivier Delaneau, Jean-François Zagury, Matthew R. Robinson, Jonathan L. Marchini, Emmanouil T. Dermitzakis

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DRAM triggers lysosomal membrane permeabilization and cell death in CD4(+) T cells infected with HIV. by Mireille Laforge, Sophie Limou, Francis Harper, Nicoletta Casartelli, Vasco Rodrigues, Ricardo Silvestre, Houda Haloui, Jean-Francois Zagury, Anna Senik, Jerome Estaquier

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G6PD and HBB polymorphisms in the Senegalese population: prevalence, correlation with clinical malaria by Fatou Thiam, Gora Diop, Cedric Coulonges, Céline Derbois, Babacar Mbengue, Alassane Thiam, Cheikh Momar Nguer, Jean Francois Zagury, Jean-Francois Deleuze, Alioune Dieye

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Identification of Genes Whose Expression Profile Is Associated with Non-Progression towards AIDS Using eQTLs. by Jean-Louis Spadoni, Pierre Rucart, Sigrid Le Clerc, Daniëlle van Manen, Cédric Coulonges, Damien Ulveling, Vincent Laville, Taoufik Labib, Lieng Taing, Olivier Delaneau, Matthieu Montes, Hanneke Schuitemaker, Josselin Noirel, Jean-François Zagury

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An elevated level of interleukin-17A in a Senegalese malaria cohort is associated with rs8193038 IL-17A genetic variant by Fatou Thiam, Gora Diop, Cedric Coulonges, Celine Derbois, Alassane Thiam, Abou Abdallah Malick Diouara, Mame Ndew Mbaye, Mamadou Diop, Cheikh Momar Nguer, Yakhya Dieye, Babacar Mbengue, Jean-Francois Zagury, Jean-Francois Deleuze, Alioune Dieye

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Identification of an in vivo orally active dual-binding protein-protein interaction inhibitor targeting TNFα through combined in silico/in vitro/in vivo screening by Hadley Mouhsine, Hélène Guillemain, Gabriel Moreau, Najla Fourati, Chouki Zerrouki, Bruno Baron, Lucille Desallais, Patrick Gizzi, Nesrine Ben Nasr, Julie Perrier, Rojo Ratsimandresy, Jean-Louis Spadoni, Hervé Do, Patrick England, Matthieu Montes, Jean-François Zagury

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Identification of New Biological Pathways Involved in Skin Aging From the Analysis of French Women Genome-Wide Data by Myriam Rahmouni, Vincent Laville, Jean-Louis Spadoni, Randa Jdid, Leopold Eckhart, Florian Gruber, Florian Gruber, Taoufik Labib, Cedric Coulonges, Wassila Carpentier, Julie Latreille, Frederique Morizot, Erwin Tschachler, Khaled Ezzedine, Sigrid Le Clerc, Jean-François Zagury

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Genome-wide association scan in HIV-1-infected individuals identifying variants influencing disease course. by Daniëlle van Manen, Olivier Delaneau, Neeltje A Kootstra, Brigitte D Boeser-Nunnink, Sophie Limou, Sebastiaan M Bol, Judith A Burger, Aeilko H Zwinderman, Perry D Moerland, Ruben van 't Slot, Jean-François Zagury, Angélique B van 't Wout, Hanneke Schuitemaker

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Genome-wide association study identifies single nucleotide polymorphism in DYRK1A associated with replication of HIV-1 in monocyte-derived macrophages. by Sebastiaan M Bol, Perry D Moerland, Sophie Limou, Yvonne van Remmerden, Cédric Coulonges, Daniëlle van Manen, Joshua T Herbeck, Jacques Fellay, Margit Sieberer, Jantine G Sietzema, Ruben van 't Slot, Jeremy Martinson, Jean-François Zagury, Hanneke Schuitemaker, Angélique B van 't Wout

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CD39/adenosine pathway is involved in AIDS progression. by Maria Nikolova, Matthieu Carriere, Mohammad-Ali Jenabian, Sophie Limou, Mehwish Younas, Ayrin Kök, Sophie Huë, Nabila Seddiki, Anne Hulin, Olivier Delaneau, Hanneke Schuitemaker, Joshua T Herbeck, James I Mullins, Maria Muhtarova, Armand Bensussan, Jean-François Zagury, Jean-Daniel Lelievre, Yves Lévy

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The HLA-B*57:01 allele corresponds to a very large MHC haploblock likely explaining its massive effect for HIV-1 elite control by Myriam Rahmouni, Lorenzo De Marco, Jean-Louis Spadoni, Maxime Tison, Raissa Medina-Santos, Taoufik Labib, Josselin Noirel, Ryad Tamouza, Sophie Limou, Olivier Delaneau, Jacques Fellay, Armand Bensussan, Sigrid Le Clerc, Paul J. McLaren, Paul J. McLaren, Jean-François Zagury

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A human leukocyte antigen imputation study uncovers possible genetic interplay between gut inflammatory processes and autism spectrum disorders by Laura Lombardi, Sigrid Le Clerc, Ching-Lien Wu, Jihène Bouassida, Wahid Boukouaci, Sobika Sugusabesan, Jean-Romain Richard, Mohamed Lajnef, Maxime Tison, Philippe Le Corvoisier, Caroline Barau, Tobias Banaschewski, Rosemary Holt, Sarah Durston, Antonio M. Persico, Bethany Oakley, Eva Loth, Jan Buitelaar, Declan Murphy, Marion Leboyer, Jean-François Zagury, Ryad Tamouza

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Linear epitope mapping of the humoral response against SARS-CoV-2 in two independent African cohorts by Inès Vigan-Womas, Jean-Louis Spadoni, Thomas Poiret, Fabien Taïeb, Fanirisoa Randrianarisaona, Rokhaya Faye, Adji Astou Mbow, Aboubacry Gaye, Ndongo Dia, Cheikh Loucoubar, Diary Juliannie Ny Mioramalala, Rila Ratovoson, Rindra Vatosoa Randremanana, Amadou Alpha Sall, Moussa Seydi, Josselin Noirel, Gabriel Moreau, Arnaud Simon, Pavlo Holenya, Jean-Philippe Meyniel, Jean-François Zagury, Matthieu Schoenhals

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CoDE-seq, an augmented whole-exome sequencing, enables the accurate detection of CNVs and mutations in Mendelian obesity and intellectual disability by Louise Montagne, Mehdi Derhourhi, Amélie Piton, Bénédicte Toussaint, Emmanuelle Durand, Emmanuel Vaillant, Dorothée Thuillier, Stefan Gaget, Franck De Graeve, Iandry Rabearivelo, Amélie Lansiaux, Bruno Lenne, Sylvie Sukno, Rachel Desailloud, Miriam Cnop, Ramona Nicolescu, Lior Cohen, Jean-François Zagury, Mélanie Amouyal, Jacques Weill, Jean Muller, Olivier Sand, Bruno Delobel, Philippe Froguel, Amélie Bonnefond

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A general approach for haplotype phasing across the full spectrum of relatedness. by Jared O'Connell, Deepti Gurdasani, Olivier Delaneau, Nicola Pirastu, Sheila Ulivi, Massimiliano Cocca, Michela Traglia, Jie Huang, Jennifer E Huffman, Igor Rudan, Ruth McQuillan, Ross M Fraser, Harry Campbell, Ozren Polasek, Gershim Asiki, Kenneth Ekoru, Caroline Hayward, Alan F Wright, Veronique Vitart, Pau Navarro, Jean-Francois Zagury, James F Wilson, Daniela Toniolo, Paolo Gasparini, Nicole Soranzo, Manjinder S Sandhu, Jonathan Marchini

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Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls. by Paul J McLaren, Cédric Coulonges, Stephan Ripke, Leonard van den Berg, Susan Buchbinder, Mary Carrington, Andrea Cossarizza, Judith Dalmau, Steven G Deeks, Olivier Delaneau, Andrea De Luca, James J Goedert, David Haas, Joshua T Herbeck, Sekar Kathiresan, Gregory D Kirk, Olivier Lambotte, Ma Luo, Simon Mallal, Daniëlle van Manen, Javier Martinez-Picado, Laurence Meyer, José M Miro, James I Mullins, Niels Obel, Stephen J O'Brien, Florencia Pereyra, Francis A Plummer, Guido Poli, Ying Qi, Pierre Rucart, Manj S Sandhu, Patrick R Shea, Hanneke Schuitemaker, Ioannis Theodorou, Fredrik Vannberg, Jan Veldink, Bruce D Walker, Amy Weintrob, Cheryl A Winkler, Steven Wolinsky, Amalio Telenti, David B Goldstein, Paul I W de Bakker, Jean-François Zagury, Jacques Fellay

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HLA-DRB1 and HLA-DQB1 genetic diversity modulates response to lithium in bipolar affective disorders by Sigrid Le Clerc, Laura Lombardi, Bernhard T. Baune, Azmeraw T. Amare, Klaus Oliver Schubert, Liping Hou, Scott R. Clark, Sergi Papiol, Micah Cearns, Urs Heilbronner, Franziska Degenhardt, Fasil Tekola-Ayele, Yi-Hsiang Hsu, Tatyana Shekhtman, Mazda Adli, Nirmala Akula, Kazufumi Akiyama, Raffaella Ardau, Bárbara Arias, Jean-Michel Aubry, Lena Backlund, Abesh Kumar Bhattacharjee, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Joanna M. Biernacka, Armin Birner, Clara Brichant-Petitjean, Pablo Cervantes, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Cristiana Cruceanu, Piotr M. Czerski, Nina Dalkner, Alexandre Dayer, Maria Del Zompo, J. Raymond DePaulo, Bruno Étain, Stephane Jamain, Peter Falkai, Andreas J. Forstner, Louise Frisen, Mark A. Frye, Janice M. Fullerton, Sébastien Gard, Julie S. Garnham, Fernando S. Goes, Maria Grigoroiu-Serbanescu, Paul Grof, Ryota Hashimoto, Joanna Hauser, Stefan Herms, Per Hoffmann, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Po-Hsiu Kuo, Tadafumi Kato, John R. Kelsoe, Sarah Kittel-Schneider, Ewa Ferensztajn-Rochowiak, Barbara König, Ichiro Kusumi, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Susan G. Leckband, Alfonso Tortorella, Mirko Manchia, Lina Martinsson, Michael J. McCarthy, Susan L. McElroy, Francesc Colom, Vincent Millischer, Marina Mitjans, Francis M. Mondimore, Palmiero Monteleone, Caroline M. Nievergelt, Markus M. Nöthen, Tomas Novák, Claire O’Donovan, Norio Ozaki, Urban Ösby, Andrea Pfennig, James B. Potash, Andreas Reif, Eva Reininghaus, Guy A. Rouleau, Janusz K. Rybakowski, Martin Schalling, Peter R. Schofield, Barbara W. Schweizer, Giovanni Severino, Paul D. Shilling, Katzutaka Shimoda, Christian Simhandl, Claire M. Slaney, Claudia Pisanu, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Mario Maj, Gustavo Turecki, Eduard Vieta, Julia Veeh, Stephanie H. Witt, Adam Wright, Peter P. Zandi, Philip B. Mitchell, Michael Bauer, Martin Alda, Marcella Rietschel, Francis J. McMahon, Thomas G. Schulze, Jean-Louis Spadoni, Wahid Boukouaci, Jean-Romain Richard, Philippe Le Corvoisier, Caroline Barrau, Jean-François Zagury, Marion Leboyer, Ryad Tamouza

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