Hasil Pencarian - Jared Adolf-Bryfogle

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  1. 1
    The PyRosetta Toolkit: a graphical user interface for the Rosetta software suite.

    The PyRosetta Toolkit: a graphical user interface for the Rosetta software suite. oleh Jared Adolf-Bryfogle, Roland L Dunbrack

    Diterbitkan 2013-01-01
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  2. 2
    Hiding in plain sight: structure and sequence analysis reveals the importance of the antibody DE loop for antibody-antigen binding

    Hiding in plain sight: structure and sequence analysis reveals the importance of the antibody DE loop for antibody-antigen binding oleh Simon P. Kelow, Jared Adolf-Bryfogle, Roland L. Dunbrack

    Diterbitkan 2020-01-01
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  3. 3
    RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.

    RosettaAntibodyDesign (RAbD): A general framework for computational antibody design. oleh Jared Adolf-Bryfogle, Oleks Kalyuzhniy, Michael Kubitz, Brian D Weitzner, Xiaozhen Hu, Yumiko Adachi, William R Schief, Roland L Dunbrack

    Diterbitkan 2018-04-01
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  4. 4
    EGGNet, a Generalizable Geometric Deep Learning Framework for Protein Complex Pose Scoring

    EGGNet, a Generalizable Geometric Deep Learning Framework for Protein Complex Pose Scoring oleh Zichen Wang, Ryan Brand, Jared Adolf-Bryfogle, Jasleen Grewal, Yanjun Qi, Steven A. Combs, Nataliya Golovach, Rebecca Alford, Huzefa Rangwala, Peter M. Clark

    Diterbitkan 2024-02-01
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  5. 5
    Computational design of a neutralizing antibody with picomolar binding affinity for all concerning SARS-CoV-2 variants

    Computational design of a neutralizing antibody with picomolar binding affinity for all concerning SARS-CoV-2 variants oleh Bo-Seong Jeong, Jeong Seok Cha, Insu Hwang, Uijin Kim, Jared Adolf-Bryfogle, Brian Coventry, Hyun-Soo Cho, Kyun-Do Kim, Byung-Ha Oh

    Diterbitkan 2022-12-01
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  6. 6
    Biochemical and structural characterization of two cif-like epoxide hydrolases from Burkholderia cenocepacia

    Biochemical and structural characterization of two cif-like epoxide hydrolases from Burkholderia cenocepacia oleh Noor M. Taher, Kelli L. Hvorecny, Cassandra M. Burke, Morgan S.A. Gilman, Gary E. Heussler, Jared Adolf-Bryfogle, Christopher D. Bahl, George A. O'Toole, Dean R. Madden

    Diterbitkan 2021-01-01
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  7. 7
    Corrigendum to “Computational design of nanomolar-binding antibodies specific to multiple SARS-CoV-2 variants by engineering a specificity switch of antibody 80R using RosettaAntibodyDesign (RAbD) results in potential generalizable therapeutic antibodies for novel SARS-CoV-2 virus” [Heliyon 9(4) (April 2023) e15032]

    Corrigendum to “Computational design of nanomolar-binding antibodies specific to multiple SARS-CoV-2 variants by engineering a specificity switch of antibody 80R using RosettaAntib... oleh Nancy E. Hernandez, Wojciech Jankowski, Rahel Frick, Simon P. Kelow, Joseph H. Lubin, Vijaya Simhadri, Jared Adolf-Bryfogle, Sagar D. Khare, Roland L. Dunbrack, Jr., Jeffrey J. Gray, Zuben E. Sauna

    Diterbitkan 2023-08-01
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  8. 8
    Computational design of nanomolar-binding antibodies specific to multiple SARS-CoV-2 variants by engineering a specificity switch of antibody 80R using RosettaAntibodyDesign (RAbD) results in potential generalizable therapeutic antibodies for novel SARS-CoV-2 virus

    Computational design of nanomolar-binding antibodies specific to multiple SARS-CoV-2 variants by engineering a specificity switch of antibody 80R using RosettaAntibodyDesign (RAbD)... oleh Nancy E. Hernandez, Wojciech Jankowski, Rahel Frick, Simon P. Kelow, Joseph H. Lubin, Vijaya Simhadri, Jared Adolf-Bryfogle, Sagar D. Khare, Roland L. Dunbrack, Jr., Jeffrey J. Gray, Zuben E. Sauna

    Diterbitkan 2023-04-01
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  9. 9
    Growing Glycans in Rosetta: Accurate de novo glycan modeling, density fitting, and rational sequon design.

    Growing Glycans in Rosetta: Accurate de novo glycan modeling, density fitting, and rational sequon design. oleh Jared Adolf-Bryfogle, Jason W Labonte, John C Kraft, Maxim Shapovalov, Sebastian Raemisch, Thomas Lütteke, Frank DiMaio, Christopher D Bahl, Jesper Pallesen, Neil P King, Jeffrey J Gray, Daniel W Kulp, William R Schief

    Diterbitkan 2024-06-01
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  10. 10
    Better together: Elements of successful scientific software development in a distributed collaborative community.

    Better together: Elements of successful scientific software development in a distributed collaborative community. oleh Julia Koehler Leman, Brian D Weitzner, P Douglas Renfrew, Steven M Lewis, Rocco Moretti, Andrew M Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland Dunbrack, Tanja Kortemme, Andrew Leaver-Fay, Charlie E M Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J Gray, Richard Bonneau

    Diterbitkan 2020-05-01
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  11. 11
    Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

    Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks oleh Julia Koehler Leman, Sergey Lyskov, Steven M. Lewis, Jared Adolf-Bryfogle, Rebecca F. Alford, Kyle Barlow, Ziv Ben-Aharon, Daniel Farrell, Jason Fell, William A. Hansen, Ameya Harmalkar, Jeliazko Jeliazkov, Georg Kuenze, Justyna D. Krys, Ajasja Ljubetič, Amanda L. Loshbaugh, Jack Maguire, Rocco Moretti, Vikram Khipple Mulligan, Morgan L. Nance, Phuong T. Nguyen, Shane Ó Conchúir, Shourya S. Roy Burman, Rituparna Samanta, Shannon T. Smith, Frank Teets, Johanna K. S. Tiemann, Andrew Watkins, Hope Woods, Brahm J. Yachnin, Christopher D. Bahl, Chris Bailey-Kellogg, David Baker, Rhiju Das, Frank DiMaio, Sagar D. Khare, Tanja Kortemme, Jason W. Labonte, Kresten Lindorff-Larsen, Jens Meiler, William Schief, Ora Schueler-Furman, Justin B. Siegel, Amelie Stein, Vladimir Yarov-Yarovoy, Brian Kuhlman, Andrew Leaver-Fay, Dominik Gront, Jeffrey J. Gray, Richard Bonneau

    Diterbitkan 2021-11-01
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