Hasil Pencarian - Inanc Birol

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  1. 1
    Interactive SARS-CoV-2 mutation timemaps [version 2; peer review: 1 approved, 2 approved with reservations]

    Interactive SARS-CoV-2 mutation timemaps [version 2; peer review: 1 approved, 2 approved with reservations] oleh René L. Warren, Inanc Birol

    Diterbitkan 2021-06-01
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  2. 2
    HLA alleles measured from COVID-19 patient transcriptomes reveal associations with disease prognosis in a New York cohort

    HLA alleles measured from COVID-19 patient transcriptomes reveal associations with disease prognosis in a New York cohort oleh René L. Warren, Inanc Birol

    Diterbitkan 2021-10-01
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  3. 3
    Models and data of AMPlify: a deep learning tool for antimicrobial peptide prediction

    Models and data of AMPlify: a deep learning tool for antimicrobial peptide prediction oleh Chenkai Li, René L. Warren, Inanc Birol

    Diterbitkan 2023-02-01
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  4. 4
    UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation.

    UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation. oleh Shaun D Jackman, Joerg Bohlmann, İnanç Birol

    Diterbitkan 2015-01-01
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  5. 5
    TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data

    TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data oleh Readman Chiu, Ka Ming Nip, Justin Chu, Inanc Birol

    Diterbitkan 2018-09-01
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  6. 6
    Linked-read sequencing for detecting short tandem repeat expansions

    Linked-read sequencing for detecting short tandem repeat expansions oleh Readman Chiu, Indhu-Shree Rajan-Babu, Inanc Birol, Jan M. Friedman

    Diterbitkan 2022-06-01
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  7. 7
    Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences

    Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences oleh Readman Chiu, Indhu-Shree Rajan-Babu, Jan M. Friedman, Inanc Birol

    Diterbitkan 2021-08-01
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  8. 8
    De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes.

    De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes. oleh Inanc Birol, Bahar Behsaz, S Austin Hammond, Erdi Kucuk, Nik Veldhoen, Caren C Helbing

    Diterbitkan 2015-01-01
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  9. 9
    Seasonal and sex-dependent gene expression in emu (Dromaius novaehollandiae) fat tissues

    Seasonal and sex-dependent gene expression in emu (Dromaius novaehollandiae) fat tissues oleh Kristina Wright, Ka Ming Nip, Ji Eun Kim, Kimberly M. Cheng, Inanc Birol

    Diterbitkan 2022-06-01
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  10. 10
    LongStitch: high-quality genome assembly correction and scaffolding using long reads

    LongStitch: high-quality genome assembly correction and scaffolding using long reads oleh Lauren Coombe, Janet X. Li, Theodora Lo, Johnathan Wong, Vladimir Nikolic, René L. Warren, Inanc Birol

    Diterbitkan 2021-10-01
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  11. 11
    ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

    ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers oleh Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanc Birol, René L. Warren

    Diterbitkan 2018-06-01
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  12. 12
    DIDA: Distributed Indexing Dispatched Alignment.

    DIDA: Distributed Indexing Dispatched Alignment. oleh Hamid Mohamadi, Benjamin P Vandervalk, Anthony Raymond, Shaun D Jackman, Justin Chu, Clay P Breshears, Inanc Birol

    Diterbitkan 2015-01-01
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  13. 13
    Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2

    Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2 oleh Ka Ming Nip, Saber Hafezqorani, Kristina K. Gagalova, Readman Chiu, Chen Yang, René L. Warren, Inanc Birol

    Diterbitkan 2023-05-01
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  14. 14
    RResolver: efficient short-read repeat resolution within ABySS

    RResolver: efficient short-read repeat resolution within ABySS oleh Vladimir Nikolić, Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip, René L. Warren, Inanç Birol

    Diterbitkan 2022-06-01
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  15. 15
    Linear time complexity de novo long read genome assembly with GoldRush

    Linear time complexity de novo long read genome assembly with GoldRush oleh Johnathan Wong, Lauren Coombe, Vladimir Nikolić, Emily Zhang, Ka Ming Nip, Puneet Sidhu, René L. Warren, Inanç Birol

    Diterbitkan 2023-05-01
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  16. 16
    Spaced Seed Data Structures for De Novo Assembly

    Spaced Seed Data Structures for De Novo Assembly oleh Inanç Birol, Justin Chu, Hamid Mohamadi, Shaun D. Jackman, Karthika Raghavan, Benjamin P. Vandervalk, Anthony Raymond, René L. Warren

    Diterbitkan 2015-01-01
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  17. 17
    Genome sequences of six Phytophthora species threatening forest ecosystems

    Genome sequences of six Phytophthora species threatening forest ecosystems oleh Nicolas Feau, Greg Taylor, Angela L. Dale, Braham Dhillon, Guillaume J. Bilodeau, Inanç Birol, Steven J.M. Jones, Richard C. Hamelin

    Diterbitkan 2016-12-01
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  18. 18
    Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii.

    Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii. oleh Metka Lenassi, Cene Gostinčar, Shaun Jackman, Martina Turk, Ivan Sadowski, Corey Nislow, Steven Jones, Inanc Birol, Nina Gunde Cimerman, Ana Plemenitaš

    Diterbitkan 2013-01-01
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  19. 19
    JAGuaR: junction alignments to genome for RNA-seq reads.

    JAGuaR: junction alignments to genome for RNA-seq reads. oleh Yaron S Butterfield, Maayan Kreitzman, Nina Thiessen, Richard D Corbett, Yisu Li, Johnson Pang, Yussanne P Ma, Steven J M Jones, İnanç Birol

    Diterbitkan 2014-01-01
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  20. 20
    Enabling robust environmental DNA assay design with “unikseq” for the identification of taxon‐specific regions within whole mitochondrial genomes

    Enabling robust environmental DNA assay design with “unikseq” for the identification of taxon‐specific regions within whole mitochondrial genomes oleh Michael J. Allison, René L. Warren, M. Louie Lopez, Neha Acharya‐Patel, Jacob J. Imbery, Lauren Coombe, Cecilia L. Yang, Inanc Birol, Caren C. Helbing

    Diterbitkan 2023-09-01
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