Evolutionary study and phylodynamic pattern of human influenza A/H3N2 virus in Indonesia from 2008 to 2010. by Agustiningsih Agustiningsih, Hidayat Trimarsanto, Restuadi Restuadi, I Made Artika, Margaret Hellard, David Handojo Muljono

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Molecular surveillance of dengue in Semarang, Indonesia revealed the circulation of an old genotype of dengue virus serotype-1. by Sukmal Fahri, Benediktus Yohan, Hidayat Trimarsanto, S Sayono, Suharyo Hadisaputro, Edi Dharmana, Din Syafruddin, R Tedjo Sasmono

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Performance of Simplexa dengue molecular assay compared to conventional and SYBR green RT-PCR for detection of dengue infection in Indonesia. by R Tedjo Sasmono, Aryati Aryati, Puspa Wardhani, Benediktus Yohan, Hidayat Trimarsanto, Sukmal Fahri, Tri Y Setianingsih, Febrina Meutiawati

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Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia. by Sisay Getachew, Sheren To, Hidayat Trimarsanto, Kamala Thriemer, Taane G Clark, Beyene Petros, Abraham Aseffa, Ric N Price, Sarah Auburn

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Molecular Epidemiology of P. vivax in Iran: High Diversity and Complex Sub-Structure Using Neutral Markers, but No Evidence of Y976F Mutation at pvmdr1. by Yaghoob Hamedi, Khojasteh Sharifi-Sarasiabi, Farzaneh Dehghan, Reza Safari, Sheren To, Irene Handayuni, Hidayat Trimarsanto, Ric N Price, Sarah Auburn

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Clinical and virological characteristics of dengue in Surabaya, Indonesia. by Puspa Wardhani, Aryati Aryati, Benediktus Yohan, Hidayat Trimarsanto, Tri Y Setianingsih, Dwiyanti Puspitasari, Muhammad Vitanata Arfijanto, Bramantono Bramantono, Suharto Suharto, R Tedjo Sasmono

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Further Evidence of Increasing Diversity of Plasmodium vivax in the Republic of Korea in Recent Years. by Jung-Yeon Kim, Youn-Kyoung Goo, Young-Gun Zo, So-Young Ji, Hidayat Trimarsanto, Sheren To, Taane G Clark, Ric N Price, Sarah Auburn

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Clinical features and virological confirmation of perinatal dengue infection in Jambi, Indonesia: A case report by Sotianingsih Haryanto, Benediktus Yohan, Marsha Sinditia Santoso, Rahma F. Hayati, Dionisius Denis, Gorga I.V.W. Udjung, Herlambang, R. Indah Kendarsari, Hidayat Trimarsanto, R. Tedjo Sasmono

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A new Plasmodium vivax reference sequence with improved assembly of the subtelomeres reveals an abundance of pir genes [version 1; referees: 2 approved] by Sarah Auburn, Ulrike Böhme, Sascha Steinbiss, Hidayat Trimarsanto, Jessica Hostetler, Mandy Sanders, Qi Gao, Francois Nosten, Chris I. Newbold, Matthew Berriman, Ric N. Price, Thomas D. Otto

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Whole-Genome Sequencing and Mutation Analyses of SARS-CoV-2 Isolates from Indonesia by Sukma Oktavianthi, Aksar Chair Lages, Rinaldy Kusuma, Tri Shinta Kurniasih, Hidayat Trimarsanto, Febi Andriani, David Rustandi, Tandry Meriyanti, Irawan Yusuf, Safarina G. Malik, Juandy Jo, Ivet Suriapranata

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Genomic profiles of Indonesian colorectal cancer patients [version 2; peer review: 2 approved] by Saskia A. Nursyirwan, Firhat Idrus, Rabbinu R. Pribadi, Virly N. Muzellina, Sofy Meilany, Ninik Sukartini, Hidayat Trimarsanto, Safarina G. Malik, Hasan Maulahela, Murdani Abdullah, Amanda P. Utari, Ari F. Syam

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Chloroquine efficacy for Plasmodium vivax in Myanmar in populations with high genetic diversity and moderate parasite gene flow by Myo Win Htun, Nan Cho Nwe Mon, Khin Myo Aye, Chan Myae Hlaing, Myat Phone Kyaw, Irene Handayuni, Hidayat Trimarsanto, Dorina Bustos, Pascal Ringwald, Ric N. Price, Sarah Auburn, Kamala Thriemer

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Exceptional Complex Chromosomal Rearrangements in Three Generations by Hannie Kartapradja, Nanis Sacharina Marzuki, Mark D. Pertile, David Francis, Lita Putri Suciati, Helena Woro Anggaratri, Debby Dwi Ambarwati, Firman Prathama Idris, Harry Lesmana, Hidayat Trimarsanto, Chrysantine Paramayuda, Alida Roswita Harahap

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Whole genome sequencing of Indonesian dengue virus isolates using next-generation sequencing by Benediktus Yohan, Rama Dhenni, Rahma F Hayati, Frilasita Aisyah Yudhaputri, Dionisius Denis, Yanuarni WB Pamai, Anna Matiana Afida, Ingrid A Hutagalung, Sotianingsih Haryanto, Hidayat Trimarsanto, Khin Saw Aye Myint, R. Tedjo Sasmono

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Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections. by Zuleima Pava, Rintis Noviyanti, Irene Handayuni, Hidayat Trimarsanto, Leily Trianty, Faustina H Burdam, Enny Kenangalem, Retno A S Utami, Yusrifar K Tirta, Farah Coutrier, Jeanne R Poespoprodjo, Ric N Price, Jutta Marfurt, Sarah Auburn

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Contrasting Transmission Dynamics of Co-endemic Plasmodium vivax and P. falciparum: Implications for Malaria Control and Elimination. by Rintis Noviyanti, Farah Coutrier, Retno A S Utami, Hidayat Trimarsanto, Yusrifar K Tirta, Leily Trianty, Andreas Kusuma, Inge Sutanto, Ayleen Kosasih, Rita Kusriastuti, William A Hawley, Ferdinand Laihad, Neil Lobo, Jutta Marfurt, Taane G Clark, Ric N Price, Sarah Auburn

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VivaxGEN: An open access platform for comparative analysis of short tandem repeat genotyping data in Plasmodium vivax populations. by Hidayat Trimarsanto, Ernest D Benavente, Rintis Noviyanti, Retno Ayu Setya Utami, Leily Trianty, Zuleima Pava, Sisay Getachew, Jung-Yeon Kim, Youn-Kyoung Goo, Sonam Wangchuck, Yaobao Liu, Qi Gao, Simone Dowd, Qin Cheng, Taane G Clark, Ric N Price, Sarah Auburn

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Genomics of Plasmodium vivax in Colombia reveals evidence of local bottle-necking and inter-country connectivity in the Americas by Edwin Sutanto, Zuleima Pava, Diego F. Echeverry, Tatiana M. Lopera-Mesa, Lidia Madeline Montenegro, Maria F. Yasnot-Acosta, Ernest Diez Benavente, Richard D. Pearson, Sócrates Herrera, Myriam Arévalo-Herrera, Hidayat Trimarsanto, Angela Rumaseb, Rintis Noviyanti, Dominic P. Kwiatkowski, Ric N. Price, Sarah Auburn

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Isolation and complete genome analysis of neurotropic dengue virus serotype 3 from the cerebrospinal fluid of an encephalitis patient. by Rama Dhenni, Mulya Rahma Karyanti, Nina Dwi Putri, Benediktus Yohan, Frilasita A Yudhaputri, Chairin Nisa Ma'roef, Araniy Fadhilah, Aditya Perkasa, Restuadi Restuadi, Hidayat Trimarsanto, Irawan Mangunatmadja, Jeremy P Ledermann, Ronald Rosenberg, Ann M Powers, Khin Saw Aye Myint, R Tedjo Sasmono

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Molecular surveillance over 14 years confirms reduction of Plasmodium vivax and falciparum transmission after implementation of Artemisinin-based combination therapy in Papua, Indo... by Zuleima Pava, Agatha M Puspitasari, Angela Rumaseb, Irene Handayuni, Leily Trianty, Retno A S Utami, Yusrifar K Tirta, Faustina Burdam, Enny Kenangalem, Grennady Wirjanata, Steven Kho, Hidayat Trimarsanto, Nicholas M Anstey, Jeanne Rini Poespoprodjo, Rintis Noviyanti, Ric N Price, Jutta Marfurt, Sarah Auburn

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