Hasil Pencarian - Erik Garrison

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  1. 1
    A graph extension of the positional Burrows–Wheeler transform and its applications

    A graph extension of the positional Burrows–Wheeler transform and its applications oleh Adam M. Novak, Erik Garrison, Benedict Paten

    Diterbitkan 2017-07-01
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  2. 2
    GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.

    GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs. oleh Manuel Tognon, Vincenzo Bonnici, Erik Garrison, Rosalba Giugno, Luca Pinello

    Diterbitkan 2021-09-01
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  3. 3
    Protocol for preparing Drosophila genomic DNA to create chromosome-level de novo genome assemblies

    Protocol for preparing Drosophila genomic DNA to create chromosome-level de novo genome assemblies oleh Alexis L. Sperling, Daniel K. Fabian, Erik Garrison, David M. Glover

    Diterbitkan 2024-06-01
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  4. 4
    Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph

    Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph oleh Rui Martiniano, Erik Garrison, Eppie R. Jones, Andrea Manica, Richard Durbin

    Diterbitkan 2020-09-01
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  5. 5
    A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar.

    A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar. oleh Erik Garrison, Zev N Kronenberg, Eric T Dawson, Brent S Pedersen, Pjotr Prins

    Diterbitkan 2022-05-01
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  6. 6
    Genotyping structural variants in pangenome graphs using the vg toolkit

    Genotyping structural variants in pangenome graphs using the vg toolkit oleh Glenn Hickey, David Heller, Jean Monlong, Jonas A. Sibbesen, Jouni Sirén, Jordan Eizenga, Eric T. Dawson, Erik Garrison, Adam M. Novak, Benedict Paten

    Diterbitkan 2020-02-01
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  7. 7
    A super-pangenome of the North American wild grape species

    A super-pangenome of the North American wild grape species oleh Noé Cochetel, Andrea Minio, Andrea Guarracino, Jadran F. Garcia, Rosa Figueroa-Balderas, Mélanie Massonnet, Takao Kasuga, Jason P. Londo, Erik Garrison, Brandon S. Gaut, Dario Cantu

    Diterbitkan 2023-12-01
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  8. 8
    Viral coinfection analysis using a MinHash toolkit

    Viral coinfection analysis using a MinHash toolkit oleh Eric T. Dawson, Sarah Wagner, David Roberson, Meredith Yeager, Joseph Boland, Erik Garrison, Stephen Chanock, Mark Schiffman, Tina Raine-Bennett, Thomas Lorey, Phillip E. Castle, Lisa Mirabello, Richard Durbin

    Diterbitkan 2019-07-01
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  9. 9
    Pangenome graphs in infectious disease: a comprehensive genetic variation analysis of Neisseria meningitidis leveraging Oxford Nanopore long reads

    Pangenome graphs in infectious disease: a comprehensive genetic variation analysis of Neisseria meningitidis leveraging Oxford Nanopore long reads oleh Zuyu Yang, Andrea Guarracino, Andrea Guarracino, Patrick J. Biggs, Patrick J. Biggs, Michael A. Black, Nuzla Ismail, Jana Renee Wold, Tony R. Merriman, Tony R. Merriman, Pjotr Prins, Erik Garrison, Joep de Ligt

    Diterbitkan 2023-08-01
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  10. 10
    478 Translation of a therapeutic neoantigen vaccine workflow to SARS-CoV-2 vaccine development

    478 Translation of a therapeutic neoantigen vaccine workflow to SARS-CoV-2 vaccine development oleh Benjamin Vincent, Timothy O’Donnell, Maria Sambade, Julia Kodysh, Steven Vensko, Wolfgang Beck, Christof Smith, Sarah Entwistle, Caryn Willis, Jason Garness, Eric Routh, Kelly Olsen, Brandon Carpenter, Kaylee Gentry, Maria Fadri, Misha Fini, Amber Washington, Carsten Haber, Kirsten Heiss, Volker Stadler, Erik Garrison, Oliver Grant, Robert Woods, Mark Heise, Alexander Rubinsteyn

    Diterbitkan 2020-11-01
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  11. 11
    A diploid assembly-based benchmark for variants in the major histocompatibility complex

    A diploid assembly-based benchmark for variants in the major histocompatibility complex oleh Chen-Shan Chin, Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan, Mikko Rautiainen, Sergey Aganezov, Melanie Kirsche, Samantha Zarate, Michael C. Schatz, Chunlin Xiao, William J. Rowell, Charles Markello, Jesse Farek, Fritz J. Sedlazeck, Vikas Bansal, Byunggil Yoo, Neil Miller, Xin Zhou, Andrew Carroll, Alvaro Martinez Barrio, Marc Salit, Tobias Marschall, Alexander T. Dilthey, Justin M. Zook

    Diterbitkan 2020-09-01
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  12. 12
    A comprehensive map of mobile element insertion polymorphisms in humans.

    A comprehensive map of mobile element insertion polymorphisms in humans. oleh Chip Stewart, Deniz Kural, Michael P Strömberg, Jerilyn A Walker, Miriam K Konkel, Adrian M Stütz, Alexander E Urban, Fabian Grubert, Hugo Y K Lam, Wan-Ping Lee, Michele Busby, Amit R Indap, Erik Garrison, Chad Huff, Jinchuan Xing, Michael P Snyder, Lynn B Jorde, Mark A Batzer, Jan O Korbel, Gabor T Marth, 1000 Genomes Project

    Diterbitkan 2011-08-01
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  13. 13
    Landscape and selection of vaccine epitopes in SARS-CoV-2

    Landscape and selection of vaccine epitopes in SARS-CoV-2 oleh Christof C. Smith, Kelly S. Olsen, Kaylee M. Gentry, Maria Sambade, Wolfgang Beck, Jason Garness, Sarah Entwistle, Caryn Willis, Steven Vensko, Allison Woods, Misha Fini, Brandon Carpenter, Eric Routh, Julia Kodysh, Timothy O’Donnell, Carsten Haber, Kirsten Heiss, Volker Stadler, Erik Garrison, Adam M. Sandor, Jenny P. Y. Ting, Jared Weiss, Krzysztof Krajewski, Oliver C. Grant, Robert J. Woods, Mark Heise, Benjamin G. Vincent, Alex Rubinsteyn

    Diterbitkan 2021-06-01
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  14. 14
    A strategy for building and using a human reference pangenome [version 2; peer review: 2 approved]

    A strategy for building and using a human reference pangenome [version 2; peer review: 2 approved] oleh Bastien Llamas, Giuseppe Narzisi, Valerie Schneider, Peter A. Audano, Evan Biederstedt, Lon Blauvelt, Peter Bradbury, Xian Chang, Chen-Shan Chin, Arkarachai Fungtammasan, Wayne E. Clarke, Alan Cleary, Jana Ebler, Jordan Eizenga, Jonas A. Sibbesen, Charles J. Markello, Erik Garrison, Shilpa Garg, Glenn Hickey, Gerard R. Lazo, Michael F. Lin, Medhat Mahmoud, Tobias Marschall, Ilia Minkin, Jean Monlong, Rajeeva L. Musunuri, Sagayamary Sagayaradj, Adam M. Novak, Mikko Rautiainen, Allison Regier, Fritz J. Sedlazeck, Jouni Siren, Yassine Souilmi, Justin Wagner, Travis Wrightsman, Toshiyuki T. Yokoyama, Qiandong Zeng, Justin M. Zook, Benedict Paten, Ben Busby

    Diterbitkan 2021-07-01
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