Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle by Trestan Pillonel, Claire Bertelli, Gilbert Greub

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Alpha and Omicron SARS-CoV-2 Adaptation in an Upper Respiratory Tract Model by Gregory Mathez, Trestan Pillonel, Claire Bertelli, Valeria Cagno

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zDB: bacterial comparative genomics made easy by Bastian Marquis, Trestan Pillonel, Alessia Carrara, Claire Bertelli

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Pathogenic Determinants of the <i>Mycobacterium kansasii</i> Complex: An Unsuspected Role for Distributive Conjugal Transfer by Florian Tagini, Trestan Pillonel, Claire Bertelli, Katia Jaton, Gilbert Greub

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Prevalence and Factors Associated with Prosthetic Joint Infections in Patients with <i>Staphylococcus aureus</i> Bacteraemia: A 7-Year Retrospective Study by Matthaios Papadimitriou-Olivgeris, Laurence Senn, Claire Bertelli, Bruno Grandbastien, Sylvain Steinmetz, Noémie Boillat-Blanco

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FECAL MICROBIOTA TRANSFER REDUCES ALCOHOL PREFERENCE IN STRESSED RATS by Léa Aeschlimann, Kshitij Jadhav, Frederica Gilardi, Aurélien Thomas, Claire Bertelli, Sedreh Nassirnia, Gilbert Greub, Benjamin Boutrel

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Molecular diagnosis and enrichment culture identified a septic pseudoarthrosis due to an infection with Erysipelatoclostridium ramosum by Fathiah Zakham, Trestan Pillonel, Anne-Sophie Brunel, Pierre-Yves Zambelli, Gilbert Greub, Antony Croxatto, Claire Bertelli

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Distinct Genomic Features Characterize Two Clades of Corynebacterium diphtheriae: Proposal of Corynebacterium diphtheriae Subsp. diphtheriae Subsp. nov. and Corynebacterium diphthe... by Florian Tagini, Trestan Pillonel, Antony Croxatto, Claire Bertelli, Angela Koutsokera, Alban Lovis, Gilbert Greub, Gilbert Greub

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Reduced Chlorine in Drinking Water Distribution Systems Impacts Bacterial Biodiversity in Biofilms by Claire Bertelli, Sophie Courtois, Marta Rosikiewicz, Philippe Piriou, Sébastien Aeby, Samuel Robert, Jean-François Loret, Gilbert Greub

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Association of pathogenic determinants of Fusobacterium necrophorum with bacteremia, and Lemierre’s syndrome by Alessia Carrara, Claire Bertelli, Céline Gardiol, Bastian Marquis, Diego O. Andrey, Jacques Schrenzel, Trestan Pillonel, Gilbert Greub

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High throughput sequencing and proteomics to identify immunogenic proteins of a new pathogen: the dirty genome approach. by Gilbert Greub, Carole Kebbi-Beghdadi, Claire Bertelli, François Collyn, Beat M Riederer, Camille Yersin, Antony Croxatto, Didier Raoult

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The Waddlia genome: a window into chlamydial biology. by Claire Bertelli, François Collyn, Antony Croxatto, Christian Rückert, Adam Polkinghorne, Adam Polkinghorne, Carole Kebbi-Beghdadi, Alexander Goesmann, Lloyd Vaughan, Gilbert Greub

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Trimethylamine-<i>N</i>-Oxide Postprandial Response in Plasma and Urine Is Lower After Fermented Compared to Non-Fermented Dairy Consumption in Healthy Adults by Kathryn J. Burton, Ralf Krüger, Valentin Scherz, Linda H. Münger, Gianfranco Picone, Nathalie Vionnet, Claire Bertelli, Gilbert Greub, Francesco Capozzi, Guy Vergères

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Temporal changes in fecal microbiota of patients infected with COVID-19: a longitudinal cohort by Tatiana Galperine, Yangji Choi, Jean-Luc Pagani, Antonios Kritikos, Matthaios Papadimitriou-Olivgeris, Marie Méan, Valentin Scherz, Onya Opota, Gilbert Greub, Benoit Guery, Claire Bertelli, the RegCOVID Study Group

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Decreased Fetal Movements: A Sign of Placental SARS-CoV-2 Infection with Perinatal Brain Injury by Guillaume Favre, Sara Mazzetti, Carole Gengler, Claire Bertelli, Juliane Schneider, Bernard Laubscher, Romina Capoccia, Fatemeh Pakniyat, Inès Ben Jazia, Béatrice Eggel-Hort, Laurence de Leval, Léo Pomar, Gilbert Greub, David Baud, Eric Giannoni

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Microbiota and Metabolite Modifications after Dietary Exclusion of Dairy Products and Reduced Consumption of Fermented Food in Young and Older Men by Jinyoung Kim, Kathryn J. Burton-Pimentel, Charlotte Fleuti, Carola Blaser, Valentin Scherz, René Badertscher, Corinne Marmonier, Noëlle Lyon-Belgy, Aurélie Caille, Véronique Pidou, Adeline Blot, Claire Bertelli, Jérémie David, Ueli Bütikofer, Gilbert Greub, Dominique Dardevet, Sergio Polakof, Guy Vergères

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Detection of SARS-CoV-2 infection clusters: The useful combination of spatiotemporal clustering and genomic analyses by Yangji Choi, Anaïs Ladoy, Anaïs Ladoy, David De Ridder, David De Ridder, David De Ridder, David De Ridder, Damien Jacot, Séverine Vuilleumier, Claire Bertelli, Idris Guessous, Idris Guessous, Idris Guessous, Trestan Pillonel, Stéphane Joost, Stéphane Joost, Stéphane Joost, Gilbert Greub

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The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand. by Marian Morales, Vladimir Sentchilo, Claire Bertelli, Andrea Komljenovic, Nadezda Kryuchkova-Mostacci, Audrey Bourdilloud, Burkhard Linke, Alexander Goesmann, Keith Harshman, Francisca Segers, Fabien Delapierre, Damien Fiorucci, Mathieu Seppey, Evgeniya Trofimenco, Pauline Berra, Athimed El Taher, Chloé Loiseau, Dejan Roggero, Madeleine Sulfiotti, Angela Etienne, Gustavo Ruiz Buendia, Loïc Pillard, Angelique Escoriza, Roxane Moritz, Cedric Schneider, Esteban Alfonso, Fatma Ben Jeddou, Oliver Selmoni, Gregory Resch, Gilbert Greub, Olivier Emery, Manupriyam Dubey, Trestan Pillonel, Marc Robinson-Rechavi, Jan Roelof van der Meer

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NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test by David Dylus, David Dylus, David Dylus, Trestan Pillonel, Onya Opota, Daniel Wüthrich, Daniel Wüthrich, Helena M. B. Seth-Smith, Helena M. B. Seth-Smith, Adrian Egli, Adrian Egli, Stefano Leo, Vladimir Lazarevic, Jacques Schrenzel, Sacha Laurent, Claire Bertelli, Dominique S. Blanc, Stefan Neuenschwander, Alban Ramette, Laurent Falquet, Laurent Falquet, Frank Imkamp, Peter M. Keller, Andre Kahles, Andre Kahles, Simone Oberhaensli, Simone Oberhaensli, Valérie Barbié, Christophe Dessimoz, Christophe Dessimoz, Christophe Dessimoz, Christophe Dessimoz, Christophe Dessimoz, Gilbert Greub, Aitana Lebrand

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How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort by Fanny Wegner, Blanca Cabrera-Gil, Araud Tanguy, Christiane Beckmann, Niko Beerenwinkel, Claire Bertelli, Matteo Carrara, Lorenzo Cerutti, Chaoran Chen, Samuel Cordey, Alexis Dumoulin, Louis du Plessis, Marc Friedli, Yannick Gerth, Gilbert Greub, Adrian Härri, Hans Hirsch, Cedric Howald, Michael Huber, Alexander Imhof, Laurent Kaiser, Verena Kufner, Stephen L. Leib, Karoline Leuzinger, Etleva Lleshi, Gladys Martinetti, Mirjam Mäusezahl, Milo Moraz, Richard Neher, Oliver Nolte, Alban Ramette, Maurice Redondo, Lorenz Risch, Lionel Rohner, Tim Roloff, Pascal Schläepfer, Katrin Schneider, Franziska Singer, Valeria Spina, Tanja Stadler, Erik Studer, Ivan Topolsky, Alexandra Trkola, Daniel Walther, Nadia Wohlwend, Cinzia Zehnder, Aitana Neves, Adrian Egli

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