Hasil Pencarian - Benjamin P. Berman

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  1. 1
    CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes

    CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes oleh Irene Unterman, Dana Avrahami, Efrat Katsman, Timothy J. Triche, Benjamin Glaser, Benjamin P. Berman

    Diterbitkan 2024-06-01
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  2. 2
    Author Correction: CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes

    Author Correction: CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes oleh Irene Unterman, Dana Avrahami, Efrat Katsman, Timothy J. Triche, Benjamin Glaser, Benjamin P. Berman

    Diterbitkan 2024-07-01
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  3. 3
    Expanding the MECP2 network using comparative genomics reveals potential therapeutic targets for Rett syndrome

    Expanding the MECP2 network using comparative genomics reveals potential therapeutic targets for Rett syndrome oleh Irene Unterman, Idit Bloch, Simona Cazacu, Gila Kazimirsky, Bruria Ben-Zeev, Benjamin P Berman, Chaya Brodie, Yuval Tabach

    Diterbitkan 2021-08-01
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  4. 4
    Publisher Correction: A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes

    Publisher Correction: A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes oleh Yueyuan Zheng, Guowei Huang, Tiago C. Silva, Qian Yang, Yan-Yi Jiang, H. Phillip Koeffler, De-Chen Lin, Benjamin P. Berman

    Diterbitkan 2021-06-01
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  5. 5
    A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes

    A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes oleh Yueyuan Zheng, Guowei Huang, Tiago C. Silva, Qian Yang, Yan-Yi Jiang, H. Phillip Koeffler, De-Chen Lin, Benjamin P. Berman

    Diterbitkan 2021-04-01
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  6. 6
    Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity.

    Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity. oleh Li Jia, Benjamin P Berman, Unnati Jariwala, Xiting Yan, Jon P Cogan, Allison Walters, Ting Chen, Grant Buchanan, Baruch Frenkel, Gerhard A Coetzee

    Diterbitkan 2008-01-01
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  7. 7
    Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation

    Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation oleh Yueyuan Zheng, Benjamin Ziman, Allen S. Ho, Uttam K. Sinha, Li-Yan Xu, En-Min Li, H Phillip Koeffler, Benjamin P. Berman, De-Chen Lin

    Diterbitkan 2023-08-01
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  8. 8
    Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing

    Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing oleh Efrat Katsman, Shari Orlanski, Filippo Martignano, Ilana Fox-Fisher, Ruth Shemer, Yuval Dor, Aviad Zick, Amir Eden, Iacopo Petrini, Silvestro G. Conticello, Benjamin P. Berman

    Diterbitkan 2022-07-01
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  9. 9
    GENAVi: a shiny web application for gene expression normalization, analysis and visualization

    GENAVi: a shiny web application for gene expression normalization, analysis and visualization oleh Alberto Luiz P. Reyes, Tiago C. Silva, Simon G. Coetzee, Jasmine T. Plummer, Brian D. Davis, Stephanie Chen, Dennis J. Hazelett, Kate Lawrenson, Benjamin P. Berman, Simon A. Gayther, Michelle R. Jones

    Diterbitkan 2019-10-01
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  10. 10
    Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation.

    Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation. oleh Crystal N Marconett, Beiyun Zhou, Megan E Rieger, Suhaida A Selamat, Mickael Dubourd, Xiaohui Fang, Sean K Lynch, Theresa Ryan Stueve, Kimberly D Siegmund, Benjamin P Berman, Zea Borok, Ite A Laird-Offringa

    Diterbitkan 2013-06-01
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  11. 11
    Functional enhancers at the gene-poor 8q24 cancer-linked locus.

    Functional enhancers at the gene-poor 8q24 cancer-linked locus. oleh Li Jia, Gilad Landan, Mark Pomerantz, Rami Jaschek, Paula Herman, David Reich, Chunli Yan, Omar Khalid, Phil Kantoff, William Oh, J Robert Manak, Benjamin P Berman, Brian E Henderson, Baruch Frenkel, Christopher A Haiman, Matthew Freedman, Amos Tanay, Gerhard A Coetzee

    Diterbitkan 2009-08-01
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  12. 12
    Non-coding somatic mutations converge on the PAX8 pathway in ovarian cancer

    Non-coding somatic mutations converge on the PAX8 pathway in ovarian cancer oleh Rosario I. Corona, Ji-Heui Seo, Xianzhi Lin, Dennis J. Hazelett, Jessica Reddy, Marcos A. S. Fonseca, Forough Abassi, Yvonne G. Lin, Paulette Y. Mhawech-Fauceglia, Sohrab P. Shah, David G. Huntsman, Alexander Gusev, Beth Y. Karlan, Benjamin P. Berman, Matthew L. Freedman, Simon A. Gayther, Kate Lawrenson

    Diterbitkan 2020-04-01
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  13. 13
    FOXC1 Activates Smoothened-Independent Hedgehog Signaling in Basal-like Breast Cancer

    FOXC1 Activates Smoothened-Independent Hedgehog Signaling in Basal-like Breast Cancer oleh Bingchen Han, Ying Qu, Yanli Jin, Yi Yu, Nan Deng, Kolja Wawrowsky, Xiao Zhang, Na Li, Shikha Bose, Qiang Wang, Sugunadevi Sakkiah, Ravinder Abrol, Tor W. Jensen, Benjamin P. Berman, Hisashi Tanaka, Jeffrey Johnson, Bowen Gao, Jijun Hao, Zhenqiu Liu, Ralph Buttyan, Partha S. Ray, Mien-Chie Hung, Armando E. Giuliano, Xiaojiang Cui

    Diterbitkan 2015-11-01
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  14. 14
    DNA methylation and transcriptomic features are preserved throughout disease recurrence and chemoresistance in high grade serous ovarian cancers

    DNA methylation and transcriptomic features are preserved throughout disease recurrence and chemoresistance in high grade serous ovarian cancers oleh Nicole Gull, Michelle R. Jones, Pei-Chen Peng, Simon G. Coetzee, Tiago C. Silva, Jasmine T. Plummer, Alberto Luiz P. Reyes, Brian D. Davis, Stephanie S. Chen, Kate Lawrenson, Jenny Lester, Christine Walsh, Bobbie J. Rimel, Andrew J. Li, Ilana Cass, Yonatan Berg, John-Paul B. Govindavari, Joanna K. L. Rutgers, Benjamin P. Berman, Beth Y. Karlan, Simon A. Gayther

    Diterbitkan 2022-07-01
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  15. 15
    Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression

    Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression oleh Yuan Jiang, Yan-Yi Jiang, Jian-Jun Xie, Anand Mayakonda, Masaharu Hazawa, Li Chen, Jin-Fen Xiao, Chun-Quan Li, Mo-Li Huang, Ling-Wen Ding, Qiao-Yang Sun, Liang Xu, Deepika Kanojia, Maya Jeitany, Jian-Wen Deng, Lian-Di Liao, Harmik J. Soukiasian, Benjamin P. Berman, Jia-Jie Hao, Li-Yan Xu, En-Min Li, Ming-Rong Wang, Xin-Gang Bi, De-Chen Lin, H. Phillip Koeffler

    Diterbitkan 2018-09-01
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  16. 16
    Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

    Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway oleh Jian Carrot-Zhang, Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S. Damrauer, Tiago Chedraoui Silva, Christopher K. Wong, Hyo Young Choi, Ina Felau, A. Gordon Robertson, Mauro A.A. Castro, Lisui Bao, Esther Rheinbay, Eric Minwei Liu, Tuan Trieu, David Haan, Christina Yau, Toshinori Hinoue, Yuexin Liu, Ofer Shapira, Kiran Kumar, Karen L. Mungall, Hailei Zhang, Jake June-Koo Lee, Ashton Berger, Galen F. Gao, Binyamin Zhitomirsky, Wen-Wei Liang, Meng Zhou, Sitapriya Moorthi, Alice H. Berger, Eric A. Collisson, Michael C. Zody, Li Ding, Andrew D. Cherniack, Gad Getz, Olivier Elemento, Christopher C. Benz, Josh Stuart, J.C. Zenklusen, Rameen Beroukhim, Jason C. Chang, Joshua D. Campbell, D. Neil Hayes, Lixing Yang, Peter W. Laird, John N. Weinstein, David J. Kwiatkowski, Ming S. Tsao, William D. Travis, Ekta Khurana, Benjamin P. Berman, Katherine A. Hoadley, Nicolas Robine, Matthew Meyerson, Ramaswamy Govindan, Marcin Imielinski

    Diterbitkan 2021-02-01
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