Hasil Pencarian - Benjamin J. Raphael

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  1. 1
    Chapter 6: Structural variation and medical genomics.

    Chapter 6: Structural variation and medical genomics. oleh Benjamin J Raphael

    Diterbitkan 2012-01-01
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  2. 2
    Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing data

    Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing data oleh Simone Zaccaria, Benjamin J. Raphael

    Diterbitkan 2020-09-01
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  3. 3
    A zero-agnostic model for copy number evolution in cancer.

    A zero-agnostic model for copy number evolution in cancer. oleh Henri Schmidt, Palash Sashittal, Benjamin J Raphael

    Diterbitkan 2023-11-01
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  4. 4
    Using controls to limit false discovery in the era of big data

    Using controls to limit false discovery in the era of big data oleh Matthew M. Parks, Benjamin J. Raphael, Charles E. Lawrence

    Diterbitkan 2018-09-01
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  5. 5
    Accurate computation of survival statistics in genome-wide studies.

    Accurate computation of survival statistics in genome-wide studies. oleh Fabio Vandin, Alexandra Papoutsaki, Benjamin J Raphael, Eli Upfal

    Diterbitkan 2015-05-01
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  6. 6
    Simultaneous identification of multiple driver pathways in cancer.

    Simultaneous identification of multiple driver pathways in cancer. oleh Mark D M Leiserson, Dima Blokh, Roded Sharan, Benjamin J Raphael

    Diterbitkan 2013-01-01
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  7. 7
    ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model

    ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model oleh Palash Sashittal, Haochen Zhang, Christine A. Iacobuzio-Donahue, Benjamin J. Raphael

    Diterbitkan 2023-11-01
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  8. 8
    Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer.

    Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer. oleh Ali Bashir, Stanislav Volik, Colin Collins, Vineet Bafna, Benjamin J Raphael

    Diterbitkan 2008-04-01
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  9. 9
    SuperDendrix algorithm integrates genetic dependencies and genomic alterations across pathways and cancer types

    SuperDendrix algorithm integrates genetic dependencies and genomic alterations across pathways and cancer types oleh Tae Yoon Park, Mark D.M. Leiserson, Gunnar W. Klau, Benjamin J. Raphael

    Diterbitkan 2022-02-01
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  10. 10
    Quantitative phosphoproteomics reveals SLP-76 dependent regulation of PAG and Src family kinases in T cells.

    Quantitative phosphoproteomics reveals SLP-76 dependent regulation of PAG and Src family kinases in T cells. oleh Lulu Cao, Yiyuan Ding, Norris Hung, Kebing Yu, Anna Ritz, Benjamin J Raphael, Arthur R Salomon

    Diterbitkan 2012-01-01
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  11. 11
    Complexity and algorithms for copy-number evolution problems

    Complexity and algorithms for copy-number evolution problems oleh Mohammed El-Kebir, Benjamin J. Raphael, Ron Shamir, Roded Sharan, Simone Zaccaria, Meirav Zehavi, Ron Zeira

    Diterbitkan 2017-05-01
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  12. 12
    HATCHet2: clone- and haplotype-specific copy number inference from bulk tumor sequencing data

    HATCHet2: clone- and haplotype-specific copy number inference from bulk tumor sequencing data oleh Matthew A. Myers, Brian J. Arnold, Vineet Bansal, Metin Balaban, Katelyn M. Mullen, Simone Zaccaria, Benjamin J. Raphael

    Diterbitkan 2024-05-01
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  13. 13
    Expression profiling of primary and metastatic ovarian tumors reveals differences indicative of aggressive disease.

    Expression profiling of primary and metastatic ovarian tumors reveals differences indicative of aggressive disease. oleh Alexander S Brodsky, Andrew Fischer, Daniel H Miller, Souriya Vang, Shannon MacLaughlan, Hsin-Ta Wu, Jovian Yu, Margaret Steinhoff, Colin Collins, Peter J S Smith, Benjamin J Raphael, Laurent Brard

    Diterbitkan 2014-01-01
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  14. 14
    Convergent evolution and multi-wave clonal invasion in H3 K27-altered diffuse midline gliomas treated with a PDGFR inhibitor

    Convergent evolution and multi-wave clonal invasion in H3 K27-altered diffuse midline gliomas treated with a PDGFR inhibitor oleh Sasi Arunachalam, Karol Szlachta, Samuel W. Brady, Xiaotu Ma, Bensheng Ju, Bridget Shaner, Heather L. Mulder, John Easton, Benjamin J. Raphael, Matthew Myers, Christopher Tinkle, Sariah J. Allen, Brent A. Orr, Cynthia J. Wetmore, Suzanne J. Baker, Jinghui Zhang

    Diterbitkan 2022-05-01
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  15. 15
    Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes

    Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes oleh Matthew A. Reyna, David Haan, Marta Paczkowska, Lieven P. C. Verbeke, Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad Getz, Michael S. Lawrence, Jakob Skou Pedersen, Mark A. Rubin, David A. Wheeler, Søren Brunak, Jose M. G. Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S. Cenk Sahinalp, Alfonso Valencia, PCAWG Drivers and Functional Interpretation Working Group, Jüri Reimand, Joshua M. Stuart, Benjamin J. Raphael, PCAWG Consortium

    Diterbitkan 2022-12-01
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  16. 16
    Pathway and network analysis of more than 2500 whole cancer genomes

    Pathway and network analysis of more than 2500 whole cancer genomes oleh Matthew A. Reyna, David Haan, Marta Paczkowska, Lieven P. C. Verbeke, Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad Getz, Michael S. Lawrence, Jakob Skou Pedersen, Mark A. Rubin, David A. Wheeler, Søren Brunak, Jose M. G. Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S. Cenk Sahinalp, Alfonso Valencia, PCAWG Drivers and Functional Interpretation Working Group, Jüri Reimand, Joshua M. Stuart, Benjamin J. Raphael, PCAWG Consortium

    Diterbitkan 2020-02-01
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  17. 17
    The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.

    The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. oleh Shibu Yooseph, Granger Sutton, Douglas B Rusch, Aaron L Halpern, Shannon J Williamson, Karin Remington, Jonathan A Eisen, Karla B Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S Miller, Huiying Li, Susan T Mashiyama, Marcin P Joachimiak, Christopher van Belle, John-Marc Chandonia, David A Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J Raphael, Vineet Bafna, Robert Friedman, Steven E Brenner, Adam Godzik, David Eisenberg, Jack E Dixon, Susan S Taylor, Robert L Strausberg, Marvin Frazier, J Craig Venter

    Diterbitkan 2007-03-01
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  18. 18
    Eleven grand challenges in single-cell data science

    Eleven grand challenges in single-cell data science oleh David Lähnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Kieran R. Campbell, Niko Beerenwinkel, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P.F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Alicja Rączkowska, Marcel Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth

    Diterbitkan 2020-02-01
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  19. 19
    Author Correction: Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidates for targeted treatment

    Author Correction: Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidates for targeted treatment oleh Hua Sun, Song Cao, R. Jay Mashl, Chia-Kuei Mo, Simone Zaccaria, Michael C. Wendl, Sherri R. Davies, Matthew H. Bailey, Tina M. Primeau, Jeremy Hoog, Jacqueline L. Mudd, Dennis A. Dean, Rajesh Patidar, Li Chen, Matthew A. Wyczalkowski, Reyka G. Jayasinghe, Fernanda Martins Rodrigues, Nadezhda V. Terekhanova, Yize Li, Kian-Huat Lim, Andrea Wang-Gillam, Brian A. Van Tine, Cynthia X. Ma, Rebecca Aft, Katherine C. Fuh, Julie K. Schwarz, Jose P. Zevallos, Sidharth V. Puram, John F. Dipersio, The NCI PDXNet Consortium, Brandi Davis-Dusenbery, Matthew J. Ellis, Michael T. Lewis, Michael A. Davies, Meenhard Herlyn, Bingliang Fang, Jack A. Roth, Alana L. Welm, Bryan E. Welm, Funda Meric-Bernstam, Feng Chen, Ryan C. Fields, Shunqiang Li, Ramaswamy Govindan, James H. Doroshow, Jeffrey A. Moscow, Yvonne A. Evrard, Jeffrey H. Chuang, Benjamin J. Raphael, Li Ding

    Diterbitkan 2022-01-01
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  20. 20
    Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidatesfor targeted treatment

    Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidatesfor targeted treatment oleh Hua Sun, Song Cao, R. Jay Mashl, Chia-Kuei Mo, Simone Zaccaria, Michael C. Wendl, Sherri R. Davies, Matthew H. Bailey, Tina M. Primeau, Jeremy Hoog, Jacqueline L. Mudd, Dennis A. Dean, Rajesh Patidar, Li Chen, Matthew A. Wyczalkowski, Reyka G. Jayasinghe, Fernanda Martins Rodrigues, Nadezhda V. Terekhanova, Yize Li, Kian-Huat Lim, Andrea Wang-Gillam, Brian A. Van Tine, Cynthia X. Ma, Rebecca Aft, Katherine C. Fuh, Julie K. Schwarz, Jose P. Zevallos, Sidharth V. Puram, John F. Dipersio, The NCI PDXNet Consortium, Brandi Davis-Dusenbery, Matthew J. Ellis, Michael T. Lewis, Michael A. Davies, Meenhard Herlyn, Bingliang Fang, Jack A. Roth, Alana L. Welm, Bryan E. Welm, Funda Meric-Bernstam, Feng Chen, Ryan C. Fields, Shunqiang Li, Ramaswamy Govindan, James H. Doroshow, Jeffrey A. Moscow, Yvonne A. Evrard, Jeffrey H. Chuang, Benjamin J. Raphael, Li Ding

    Diterbitkan 2021-08-01
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