Search Results - Alicia Oshlack

Alicia Oshlack

Alicia Yinema Kate Nungarai Oshlack is an Australian bioinformatician and is Co-Head of Computational Biology at the Peter MacCallum Cancer Centre in Melbourne, Victoria, Australia. She is best known for her work developing methods for the analysis of transcriptome data as a measure of gene expression. She has characterized the role of gene expression in human evolution by comparisons of humans, chimpanzees, orangutans, and rhesus macaques, and works collaboratively in data analysis to improve the use of clinical sequencing of RNA samples by RNAseq for human disease diagnosis. Provided by Wikipedia
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  1. 1
    Accuracy of short tandem repeats genotyping tools in whole exome sequencing data [version 1; peer review: 2 approved, 1 approved with reservations]

    Accuracy of short tandem repeats genotyping tools in whole exome sequencing data [version 1; peer review: 2 approved, 1 approved with reservations] by Andreas Halman, Alicia Oshlack

    Published 2020-03-01
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  2. 2
    Bazam: a rapid method for read extraction and realignment of high-throughput sequencing data

    Bazam: a rapid method for read extraction and realignment of high-throughput sequencing data by Simon P. Sadedin, Alicia Oshlack

    Published 2019-04-01
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  3. 3
    A cross-package Bioconductor workflow for analysing methylation array data [version 1; referees: 3 approved, 1 approved with reservations]

    A cross-package Bioconductor workflow for analysing methylation array data [version 1; referees: 3 approved, 1 approved with reservations] by Jovana Maksimovic, Belinda Phipson, Alicia Oshlack

    Published 2016-06-01
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  4. 4
    Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database.

    Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database. by Luke Zappia, Belinda Phipson, Alicia Oshlack

    Published 2018-06-01
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  5. 5
    A cross-package Bioconductor workflow for analysing methylation array data [version 3; referees: 4 approved]

    A cross-package Bioconductor workflow for analysing methylation array data [version 3; referees: 4 approved] by Jovana Maksimovic, Belinda Phipson, Alicia Oshlack

    Published 2017-04-01
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  6. 6
    Gene length and detection bias in single cell RNA sequencing protocols [version 1; referees: 2 approved]

    Gene length and detection bias in single cell RNA sequencing protocols [version 1; referees: 2 approved] by Belinda Phipson, Luke Zappia, Alicia Oshlack

    Published 2017-04-01
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  7. 7
    Splatter: simulation of single-cell RNA sequencing data

    Splatter: simulation of single-cell RNA sequencing data by Luke Zappia, Belinda Phipson, Alicia Oshlack

    Published 2017-09-01
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  8. 8
    A cross-package Bioconductor workflow for analysing methylation array data [version 2; referees: 3 approved, 1 approved with reservations]

    A cross-package Bioconductor workflow for analysing methylation array data [version 2; referees: 3 approved, 1 approved with reservations] by Jovana Maksimovic, Belinda Phipson, Alicia Oshlack

    Published 2016-07-01
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  9. 9
    Gene set enrichment analysis for genome-wide DNA methylation data

    Gene set enrichment analysis for genome-wide DNA methylation data by Jovana Maksimovic, Alicia Oshlack, Belinda Phipson

    Published 2021-06-01
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  10. 10
    Using equivalence class counts for fast and accurate testing of differential transcript usage [version 2; peer review: 1 approved, 2 approved with reservations]

    Using equivalence class counts for fast and accurate testing of differential transcript usage [version 2; peer review: 1 approved, 2 approved with reservations] by Marek Cmero, Nadia M. Davidson, Alicia Oshlack

    Published 2019-04-01
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  11. 11
    Erratum to: SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes

    Erratum to: SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes by Nadia M. Davidson, Anthony D. K. Hawkins, Alicia Oshlack

    Published 2017-08-01
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  12. 12
    SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes

    SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes by Nadia M. Davidson, Anthony D. K. Hawkins, Alicia Oshlack

    Published 2017-08-01
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  13. 13
    SuperFreq: Integrated mutation detection and clonal tracking in cancer.

    SuperFreq: Integrated mutation detection and clonal tracking in cancer. by Christoffer Flensburg, Tobias Sargeant, Alicia Oshlack, Ian J Majewski

    Published 2020-02-01
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  14. 14
    DNA Methylation Profiles of Purified Cell Types in Bronchoalveolar Lavage: Applications for Mixed Cell Paediatric Pulmonary Studies

    DNA Methylation Profiles of Purified Cell Types in Bronchoalveolar Lavage: Applications for Mixed Cell Paediatric Pulmonary Studies by Shivanthan Shanthikumar, Shivanthan Shanthikumar, Shivanthan Shanthikumar, Melanie R. Neeland, Melanie R. Neeland, Richard Saffery, Richard Saffery, Sarath C. Ranganathan, Sarath C. Ranganathan, Sarath C. Ranganathan, Alicia Oshlack, Alicia Oshlack, Alicia Oshlack, Jovana Maksimovic, Jovana Maksimovic, Jovana Maksimovic

    Published 2021-12-01
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  15. 15
    Slinker: Visualising novel splicing events in RNA-Seq data [version 1; peer review: 3 approved]

    Slinker: Visualising novel splicing events in RNA-Seq data [version 1; peer review: 3 approved] by Marek Cmero, Breon Schmidt, Nadia Davidson, Paul Ekert, Alicia Oshlack

    Published 2021-12-01
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  16. 16
    splatPop: simulating population scale single-cell RNA sequencing data

    splatPop: simulating population scale single-cell RNA sequencing data by Christina B. Azodi, Luke Zappia, Alicia Oshlack, Davis J. McCarthy

    Published 2021-12-01
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  17. 17
    Toblerone: detecting exon deletion events in cancer using RNA-seq [version 1; peer review: 2 approved]

    Toblerone: detecting exon deletion events in cancer using RNA-seq [version 1; peer review: 2 approved] by Andrew Lonsdale, Paul Ekert, Hansen Kosasih, Alicia Oshlack, Andreas Halman, Lauren Brown

    Published 2023-02-01
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  18. 18
    Correction: Gene Regulation in Primates Evolves under Tissue-Specific Selection Pressures.

    Correction: Gene Regulation in Primates Evolves under Tissue-Specific Selection Pressures. by Ran Blekhman, Alicia Oshlack, Adrien E. Chabot, Gordon K. Smyth, Yoav Gilad

    Published 2009-03-01
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  19. 19
    A combination of genomic approaches reveals the role of FOXO1a in regulating an oxidative stress response pathway.

    A combination of genomic approaches reveals the role of FOXO1a in regulating an oxidative stress response pathway. by Paola de Candia, Ran Blekhman, Adrien E Chabot, Alicia Oshlack, Yoav Gilad

    Published 2008-02-01
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  20. 20
    Gene regulation in primates evolves under tissue-specific selection pressures.

    Gene regulation in primates evolves under tissue-specific selection pressures. by Ran Blekhman, Alicia Oshlack, Adrien E Chabot, Gordon K Smyth, Yoav Gilad

    Published 2008-11-01
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