Hasil Pencarian - Alexey I. Nesvizhskii

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  1. 1
    Analysis of protein complexes through model‐based biclustering of label‐free quantitative AP‐MS data

    Analysis of protein complexes through model‐based biclustering of label‐free quantitative AP‐MS data oleh Hyungwon Choi, Sinae Kim, Anne‐Claude Gingras, Alexey I Nesvizhskii

    Diterbitkan 2010-01-01
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  2. 2
    Detecting diagnostic features in MS/MS spectra of post-translationally modified peptides

    Detecting diagnostic features in MS/MS spectra of post-translationally modified peptides oleh Daniel J. Geiszler, Daniel A. Polasky, Fengchao Yu, Alexey I. Nesvizhskii

    Diterbitkan 2023-07-01
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  3. 3
    MSBooster: improving peptide identification rates using deep learning-based features

    MSBooster: improving peptide identification rates using deep learning-based features oleh Kevin L. Yang, Fengchao Yu, Guo Ci Teo, Kai Li, Vadim Demichev, Markus Ralser, Alexey I. Nesvizhskii

    Diterbitkan 2023-07-01
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  4. 4
    Analysis of DIA proteomics data using MSFragger-DIA and FragPipe computational platform

    Analysis of DIA proteomics data using MSFragger-DIA and FragPipe computational platform oleh Fengchao Yu, Guo Ci Teo, Andy T. Kong, Klemens Fröhlich, Ginny Xiaohe Li, Vadim Demichev, Alexey I. Nesvizhskii

    Diterbitkan 2023-07-01
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  5. 5
    The Intrinsically Disordered N Terminus in Atg12 from Yeast Is Necessary for the Functional Structure of the Protein

    The Intrinsically Disordered N Terminus in Atg12 from Yeast Is Necessary for the Functional Structure of the Protein oleh Hana Popelka, Vikramjit Lahiri, Wayne D. Hawkins, Felipe da Veiga Leprevost, Alexey I. Nesvizhskii, Daniel J. Klionsky

    Diterbitkan 2023-10-01
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  6. 6
    The functional interactome landscape of the human histone deacetylase family

    The functional interactome landscape of the human histone deacetylase family oleh Preeti Joshi, Todd M Greco, Amanda J Guise, Yang Luo, Fang Yu, Alexey I Nesvizhskii, Ileana M Cristea

    Diterbitkan 2013-01-01
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  7. 7
    Identification of modified peptides using localization-aware open search

    Identification of modified peptides using localization-aware open search oleh Fengchao Yu, Guo Ci Teo, Andy T. Kong, Sarah E. Haynes, Dmitry M. Avtonomov, Daniel J. Geiszler, Alexey I. Nesvizhskii

    Diterbitkan 2020-08-01
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  8. 8
    "Topological significance" analysis of gene expression and proteomic profiles from prostate cancer cells reveals key mechanisms of androgen response.

    "Topological significance" analysis of gene expression and proteomic profiles from prostate cancer cells reveals key mechanisms of androgen response. oleh Adaikkalam Vellaichamy, Zoltán Dezso, Lellean JeBailey, Arul M Chinnaiyan, Arun Sreekumar, Alexey I Nesvizhskii, Gilbert S Omenn, Andrej Bugrim

    Diterbitkan 2010-06-01
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  9. 9
    Autoinhibited kinesin-1 adopts a hierarchical folding pattern

    Autoinhibited kinesin-1 adopts a hierarchical folding pattern oleh Zhenyu Tan, Yang Yue, Felipe Leprevost, Sarah Haynes, Venkatesha Basrur, Alexey I Nesvizhskii, Kristen J Verhey, Michael A Cianfrocco

    Diterbitkan 2023-11-01
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  10. 10
    The yeast Sks1p kinase signaling network regulates pseudohyphal growth and glucose response.

    The yeast Sks1p kinase signaling network regulates pseudohyphal growth and glucose response. oleh Cole Johnson, Hye Kyong Kweon, Daniel Sheidy, Christian A Shively, Dattatreya Mellacheruvu, Alexey I Nesvizhskii, Philip C Andrews, Anuj Kumar

    Diterbitkan 2014-03-01
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  11. 11
    Unraveling the glycosylated immunopeptidome with HLA-Glyco

    Unraveling the glycosylated immunopeptidome with HLA-Glyco oleh Georges Bedran, Daniel A. Polasky, Yi Hsiao, Fengchao Yu, Felipe da Veiga Leprevost, Javier A. Alfaro, Marcin Cieslik, Alexey I. Nesvizhskii

    Diterbitkan 2023-06-01
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  12. 12
    Proteomic interrogation of androgen action in prostate cancer cells reveals roles of aminoacyl tRNA synthetases.

    Proteomic interrogation of androgen action in prostate cancer cells reveals roles of aminoacyl tRNA synthetases. oleh Adaikkalam Vellaichamy, Arun Sreekumar, John R Strahler, Theckelnaycke Rajendiran, Jindan Yu, Sooryanarayana Varambally, Yong Li, Gilbert S Omenn, Arul M Chinnaiyan, Alexey I Nesvizhskii

    Diterbitkan 2009-09-01
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  13. 13
    A data-independent acquisition-based global phosphoproteomics system enables deep profiling

    A data-independent acquisition-based global phosphoproteomics system enables deep profiling oleh Reta Birhanu Kitata, Wai-Kok Choong, Chia-Feng Tsai, Pei-Yi Lin, Bo-Shiun Chen, Yun-Chien Chang, Alexey I. Nesvizhskii, Ting-Yi Sung, Yu-Ju Chen

    Diterbitkan 2021-05-01
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  14. 14
    dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts

    dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts oleh Vadim Demichev, Lukasz Szyrwiel, Fengchao Yu, Guo Ci Teo, George Rosenberger, Agathe Niewienda, Daniela Ludwig, Jens Decker, Stephanie Kaspar-Schoenefeld, Kathryn S. Lilley, Michael Mülleder, Alexey I. Nesvizhskii, Markus Ralser

    Diterbitkan 2022-07-01
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  15. 15
    Oxygen and Conformation Dependent Protein Oxidation and Aggregation by Porphyrins in Hepatocytes and Light-Exposed CellsSummary

    Oxygen and Conformation Dependent Protein Oxidation and Aggregation by Porphyrins in Hepatocytes and Light-Exposed CellsSummary oleh Dhiman Maitra, Eric L. Carter, Rani Richardson, Laure Rittié, Venkatesha Basrur, Haoming Zhang, Alexey I. Nesvizhskii, Yoichi Osawa, Matthew W. Wolf, Stephen W. Ragsdale, Nicolai Lehnert, Harald Herrmann, M. Bishr Omary

    Diterbitkan 2019-01-01
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  16. 16
    Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors

    Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors oleh Sabra I. Djomehri, Maria E. Gonzalez, Felipe da Veiga Leprevost, Shilpa R. Tekula, Hui-Yin Chang, Marissa J. White, Ashley Cimino-Mathews, Boris Burman, Venkatesha Basrur, Pedram Argani, Alexey I. Nesvizhskii, Celina G. Kleer

    Diterbitkan 2020-04-01
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  17. 17
    Multiomic characterization of pancreatic cancer-associated macrophage polarization reveals deregulated metabolic programs driven by the GM-CSF–PI3K pathway

    Multiomic characterization of pancreatic cancer-associated macrophage polarization reveals deregulated metabolic programs driven by the GM-CSF–PI3K pathway oleh Seth Boyer, Ho-Joon Lee, Nina Steele, Li Zhang, Peter Sajjakulnukit, Anthony Andren, Matthew H Ward, Rima Singh, Venkatesha Basrur, Yaqing Zhang, Alexey I Nesvizhskii, Marina Pasca di Magliano, Christopher J Halbrook, Costas A Lyssiotis

    Diterbitkan 2022-02-01
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  18. 18
    p38-mediated phosphorylation at T367 induces EZH2 cytoplasmic localization to promote breast cancer metastasis

    p38-mediated phosphorylation at T367 induces EZH2 cytoplasmic localization to promote breast cancer metastasis oleh Talha Anwar, Caroline Arellano-Garcia, James Ropa, Yu-Chih Chen, Hong Sun Kim, Euisik Yoon, Sierrah Grigsby, Venkatesha Basrur, Alexey I. Nesvizhskii, Andrew Muntean, Maria E. Gonzalez, Kelley M. Kidwell, Zaneta Nikolovska-Coleska, Celina G. Kleer

    Diterbitkan 2018-07-01
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  19. 19
    Tumor‐Selective Altered Glycosylation and Functional Attenuation of CD73 in Human Hepatocellular Carcinoma

    Tumor‐Selective Altered Glycosylation and Functional Attenuation of CD73 in Human Hepatocellular Carcinoma oleh Karel P. Alcedo, Andres Guerrero, Venkatesha Basrur, Dong Fu, Monea L. Richardson, Joshua S. McLane, Chih‐Chiang Tsou, Alexey I. Nesvizhskii, Theodore H. Welling, Carlito B. Lebrilla, Carol A. Otey, Hong Jin Kim, M. Bishr Omary, Natasha T. Snider

    Diterbitkan 2019-10-01
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  20. 20
    Immunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides

    Immunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides oleh Humberto J. Ferreira, Brian J. Stevenson, HuiSong Pak, Fengchao Yu, Jessica Almeida Oliveira, Florian Huber, Marie Taillandier-Coindard, Justine Michaux, Emma Ricart-Altimiras, Anne I. Kraemer, Lana E. Kandalaft, Daniel E. Speiser, Alexey I. Nesvizhskii, Markus Müller, Michal Bassani-Sternberg

    Diterbitkan 2024-03-01
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