Leveraging hierarchical population structure in discrete association studies. af Jonathan Carlson, Carl Kadie, Simon Mallal, David Heckerman

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Changes in subcutaneous white adipose tissue cellular composition and molecular programs underlie glucose intolerance in persons with HIV af Samuel S. Bailin, Jonathan A. Kropski, Jonathan A. Kropski, Jonathan A. Kropski, Rama D. Gangula, LaToya Hannah, Joshua D. Simmons, Mona Mashayekhi, Fei Ye, Run Fan, Simon Mallal, Simon Mallal, Simon Mallal, Simon Mallal, Simon Mallal, Christian M. Warren, Spyros A. Kalams, Spyros A. Kalams, Spyros A. Kalams, Curtis L. Gabriel, Celestine N. Wanjalla, Celestine N. Wanjalla, John R. Koethe, John R. Koethe, John R. Koethe

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Rif1 inhibits replication fork progression and controls DNA copy number in Drosophila af Alexander Munden, Zhan Rong, Amanda Sun, Rama Gangula, Simon Mallal, Jared T Nordman

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Urinary Peptides As a Novel Source of T Cell Allergen Epitopes af Ricardo da Silva Antunes, John Pham, Curtis McMurtrey, William H. Hildebrand, Elizabeth Phillips, Elizabeth Phillips, Simon Mallal, Simon Mallal, John Sidney, Paula Busse, Bjoern Peters, Bjoern Peters, Véronique Schulten, Alessandro Sette, Alessandro Sette

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Visual Genomics Analysis Studio as a Tool to Analyze Multiomic Data af Rebecca J. Hertzman, Pooja Deshpande, Shay Leary, Yueran Li, Ramesh Ram, Abha Chopra, Abha Chopra, Don Cooper, Mark Watson, Amy M. Palubinsky, Simon Mallal, Simon Mallal, Andrew Gibson, Elizabeth J. Phillips, Elizabeth J. Phillips

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Identification of Novel Yellow Fever Class II Epitopes in YF-17D Vaccinees af Jose Mateus, Alba Grifoni, Hannah Voic, Michael A. Angelo, Elizabeth Phillips, Simon Mallal, John Sidney, Alessandro Sette, Daniela Weiskopf

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HIV-1 Mutation and Recombination Rates Are Different in Macrophages and T-cells af Deborah Cromer, Timothy E. Schlub, Redmond P. Smyth, Andrew J. Grimm, Abha Chopra, Simon Mallal, Miles P. Davenport, Johnson Mak

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Anti-hepatitis C virus T-cell immunity in the context of multiple exposures to the virus. af Katja Pfafferott, Pooja Deshpande, Elizabeth McKinnon, Shahzma Merani, Andrew Lucas, David Heckerman, Simon Mallal, Mina John, Silvana Gaudieri, Michaela Lucas

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Correction: Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses. af Ricardo da Silva Antunes, Sinu Paul, John Sidney, Daniela Weiskopf, Jennifer M Dan, Elizabeth Phillips, Simon Mallal, Shane Crotty, Alessandro Sette, Cecilia S Lindestam Arlehamn

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Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses. af Ricardo da Silva Antunes, Sinu Paul, John Sidney, Daniela Weiskopf, Jennifer M Dan, Elizabeth Phillips, Simon Mallal, Shane Crotty, Alessandro Sette, Cecilia S Lindestam Arlehamn

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Cross-Reactivity to Mutated Viral Immune Targets Can Influence CD8+ T Cell Functionality: An Alternative Viral Adaptation Strategy af Jennifer Currenti, Becker M.P. Law, Kai Qin, Mina John, Mina John, Mark A. Pilkinton, Anju Bansal, Shay Leary, Ramesh Ram, Abha Chopra, Rama Gangula, Ling Yue, Ling Yue, Christian Warren, Louise Barnett, Eric Alves, Wyatt J. McDonnell, Anuradha Sooda, Sonya L. Heath, Simon Mallal, Simon Mallal, Paul Goepfert, Spyros A. Kalams, Silvana Gaudieri, Silvana Gaudieri, Silvana Gaudieri

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Constrained pattern of viral evolution in acute and early HCV infection limits viral plasticity. af Katja Pfafferott, Silvana Gaudieri, Axel Ulsenheimer, Ian James, Malte Heeg, David Nolan, Mina John, Andri Rauch, Simon Mallal, Andrew Lucas, Paul Klenerman, Helmut M Diepolder, Michaela Lucas

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High Frequency of Shared Clonotypes in Human T Cell Receptor Repertoires af Cinque Soto, Robin G. Bombardi, Morgan Kozhevnikov, Robert S. Sinkovits, Elaine C. Chen, Andre Branchizio, Nurgun Kose, Samuel B. Day, Mark Pilkinton, Madhusudan Gujral, Simon Mallal, James E. Crowe, Jr.

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Comparison of HLA allelic imputation programs. af Jason H Karnes, Christian M Shaffer, Lisa Bastarache, Silvana Gaudieri, Andrew M Glazer, Heidi E Steiner, Jonathan D Mosley, Simon Mallal, Joshua C Denny, Elizabeth J Phillips, Dan M Roden

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Erratum to: HIV integration sites in latently infected cell lines: evidence of ongoing replication af Jori Symons, Abha Chopra, Eva Malatinkova, Ward De Spiegelaere, Shay Leary, Don Cooper, Chike O. Abana, Ajantha Rhodes, Simin D. Rezaei, Linos Vandekerckhove, Simon Mallal, Sharon R. Lewin, Paul U. Cameron

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The TCR repertoire of α-synuclein-specific T cells in Parkinson’s disease is surprisingly diverse af Akul Singhania, John Pham, Rekha Dhanwani, April Frazier, Juliana Rezende Dutra, Karen S. Marder, Elizabeth Phillips, Simon Mallal, Amy W. Amara, David G. Standaert, David Sulzer, Bjoern Peters, Alessandro Sette, Cecilia S. Lindestam Arlehamn

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Adaptation to HLA-associated immune pressure over the course of HIV infection and in circulating HIV-1 strains. af Eric Alves, Marwah Al-Kaabi, Niamh M Keane, Shay Leary, Coral-Ann M Almeida, Pooja Deshpande, Jennifer Currenti, Abha Chopra, Rita Smith, Alison Castley, Simon Mallal, Spyros A Kalams, Silvana Gaudieri, Mina John

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Characterization of Magnitude and Antigen Specificity of HLA-DP, DQ, and DRB3/4/5 Restricted DENV-Specific CD4+ T Cell Responses af Alba Grifoni, Eugene Moore, Hannah Voic, John Sidney, Elizabeth Phillips, Ramesh Jadi, Simon Mallal, Aruna D. De Silva, Aruna D. De Silva, Aravinda M. De Silva, Bjoern Peters, Bjoern Peters, Daniela Weiskopf, Alessandro Sette, Alessandro Sette

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Bacterial DNA is present in the fetal intestine and overlaps with that in the placenta in mice. af Keith A Martinez, Joann Romano-Keeler, Joseph P Zackular, Daniel J Moore, Robert M Brucker, Christopher Hooper, Shufang Meng, Naoko Brown, Simon Mallal, Jeff Reese, David M Aronoff, Hakdong Shin, Maria Gloria Dominguez-Bello, Jörn-Hendrik Weitkamp

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Deep sequence analysis of HIV adaptation following vertical transmission reveals the impact of immune pressure on the evolution of HIV. af Jennifer Currenti, Abha Chopra, Mina John, Shay Leary, Elizabeth McKinnon, Eric Alves, Mark Pilkinton, Rita Smith, Louise Barnett, Wyatt J McDonnell, Michaela Lucas, Francine Noel, Simon Mallal, Joseph A Conrad, Spyros A Kalams, Silvana Gaudieri

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