Molecular Evolution of Extensively Drug-Resistant (XDR) Pseudomonas aeruginosa Strains From Patients and Hospital Environment in a Prolonged Outbreak by Michael Buhl, Michael Buhl, Christina Kästle, André Geyer, Ingo B. Autenrieth, Ingo B. Autenrieth, Silke Peter, Silke Peter, Matthias Willmann, Matthias Willmann

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Transcriptomic Basis of Serum Resistance and Virulence Related Traits in XDR P. aeruginosa Evolved Under Antibiotic Pressure in a Morbidostat Device by Mumina Javed, Mumina Javed, Benedikt Jentzsch, Benedikt Jentzsch, Maximilian Heinrich, Maximilian Heinrich, Viola Ueltzhoeffer, Silke Peter, Silke Peter, Ulrich Schoppmeier, Angel Angelov, Sandra Schwarz, Matthias Willmann, Matthias Willmann, Matthias Willmann

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Fourier-Transform Infrared (FTIR) Spectroscopy for Typing of Clinical Enterobacter cloacae Complex Isolates by Sophia Vogt, Sophia Vogt, Kim Löffler, Kim Löffler, Ariane G. Dinkelacker, Ariane G. Dinkelacker, Baris Bader, Baris Bader, Ingo B. Autenrieth, Ingo B. Autenrieth, Silke Peter, Silke Peter, Jan Liese, Jan Liese

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Prognostic Value of Gut Microbiome for Conversion from Mild Cognitive Impairment to Alzheimer’s Disease Dementia within 4 Years: Results from the AlzBiom Study by Christoph Laske, Stephan Müller, Matthias H. J. Munk, Iris Honold, Matthias Willmann, Silke Peter, Ulrich Schoppmeier

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Metagenomic Sequencing of Multiple Soil Horizons and Sites in Close Vicinity Revealed Novel Secondary Metabolite Diversity by Shrikant S. Mantri, Timo Negri, Helena Sales-Ortells, Angel Angelov, Silke Peter, Harald Neidhardt, Yvonne Oelmann, Nadine Ziemert

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Metagenomic Sequencing of Multiple Soil Horizons and Sites in Close Vicinity Revealed Novel Secondary Metabolite Diversity by Shrikant S. Mantri, Timo Negri, Helena Sales-Ortells, Angel Angelov, Silke Peter, Harald Neidhardt, Yvonne Oelmann, Nadine Ziemert

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Surveillance of Enterobacter cloacae complex colonization and comparative analysis of different typing methods on a neonatal intensive care unit in Germany by Andreas F. Wendel, Daniel Peter, Frauke Mattner, Michael Weiss, Marc Hoppenz, Sophia Wolf, Baris Bader, Silke Peter, Jan Liese

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Distinct impact of antibiotics on the gut microbiome and resistome: a longitudinal multicenter cohort study by Matthias Willmann, Maria J. G. T. Vehreschild, Lena M. Biehl, Wichard Vogel, Daniela Dörfel, Axel Hamprecht, Harald Seifert, Ingo B. Autenrieth, Silke Peter

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Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudom... by Silke Peter, Philipp Oberhettinger, Leonard Schuele, Ariane Dinkelacker, Wichard Vogel, Daniela Dörfel, Daniela Bezdan, Stephan Ossowski, Matthias Marschal, Jan Liese, Matthias Willmann

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Detection of a small IncX4 plasmid carrying the mcr-1.1 gene in a pig oral fluid sample by shotgun metagenomic sequencing by Leonard Schuele, Giuseppe Fleres, Katrin Strutzberg-Minder, Sabine Schütze, Sandra Löbert, Claudia Lambrecht, Jürgen Harlizius, Silke Peter, John W.A. Rossen, Natacha Couto

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OXA-48-like carbapenemases in Proteus mirabilis – novel genetic environments and a challenge for detection by Janko Sattler, Janina Noster, Yvonne Stelzer, Martina Spille, Sina Schäfer, Kyriaki Xanthopoulou, Julian Sommer, Jonathan Jantsch, Silke Peter, Stephan Göttig, Sören G. Gatermann, Axel Hamprecht

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Genomic surveillance of SARS-CoV-2 in the Republic of Congo by Francine Ntoumi, Claujens Chastel Mfoutou Mapanguy, Alexandru Tomazatos, Srinivas Reddy Pallerla, Le Thi Kieu Linh, Nicolas Casadei, Angel Angelov, Michael Sonnabend, Silke Peter, Peter G. Kremsner, Thirumalaisamy P. Velavan

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Forecasting local hospital bed demand for COVID-19 using on-request simulations by Raisa Kociurzynski, Angelo D’Ambrosio, Alexis Papathanassopoulos, Fabian Bürkin, Stephan Hertweck, Vanessa M. Eichel, Alexandra Heininger, Jan Liese, Nico T. Mutters, Silke Peter, Nina Wismath, Sophia Wolf, Hajo Grundmann, Tjibbe Donker

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Tracking of Antibiotic Resistance Transfer and Rapid Plasmid Evolution in a Hospital Setting by Nanopore Sequencing by Silke Peter, Mattia Bosio, Caspar Gross, Daniela Bezdan, Javier Gutierrez, Philipp Oberhettinger, Jan Liese, Wichard Vogel, Daniela Dörfel, Lennard Berger, Matthias Marschal, Matthias Willmann, Ivo Gut, Marta Gut, Ingo Autenrieth, Stephan Ossowski

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Tracking of Antibiotic Resistance Transfer and Rapid Plasmid Evolution in a Hospital Setting by Nanopore Sequencing by Silke Peter, Mattia Bosio, Caspar Gross, Daniela Bezdan, Javier Gutierrez, Philipp Oberhettinger, Jan Liese, Wichard Vogel, Daniela Dörfel, Lennard Berger, Matthias Marschal, Matthias Willmann, Ivo Gut, Marta Gut, Ingo Autenrieth, Stephan Ossowski

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Assessment of Viral Targeted Sequence Capture Using Nanopore Sequencing Directly from Clinical Samples by Leonard Schuele, Hayley Cassidy, Erley Lizarazo, Katrin Strutzberg-Minder, Sabine Schuetze, Sandra Loebert, Claudia Lambrecht, Juergen Harlizius, Alex W. Friedrich, Silke Peter, Hubert G. M. Niesters, John W. A. Rossen, Natacha Couto

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Host genetic loci LZTFL1 and CCL2 associated with SARS-CoV-2 infection and severity of COVID-19 by Jule Rüter, Srinivas Reddy Pallerla, Christian G. Meyer, Nicolas Casadei, Michael Sonnabend, Silke Peter, Dennis Nurjadi, Le Thi Kieu Linh, Rolf Fendel, Siri Göpel, Olaf Riess, Peter G. Kremsner, Thirumalaisamy P. Velavan

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Signature of Alzheimer’s Disease in Intestinal Microbiome: Results From the AlzBiom Study by Christoph Laske, Christoph Laske, Christoph Laske, Stephan Müller, Oliver Preische, Oliver Preische, Victoria Ruschil, Victoria Ruschil, Matthias H. J. Munk, Matthias H. J. Munk, Iris Honold, Silke Peter, Ulrich Schoppmeier, Matthias Willmann

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Screening and contact precautions – A survey on infection control measures for multidrug-resistant bacteria in German university hospitals by Lena M. Biehl, Hartmut Bertz, Johannes Bogner, Ute-Helke Dobermann, Johanna Kessel, Carolin Krämer, Sebastian Lemmen, Marie von Lilienfeld-Toal, Silke Peter, Mathias W. Pletz, Holger Rohde, Stefan Schmiedel, Sören Schubert, Andrew J. Ullmann, Gerd Fätkenheuer, Maria J. G. T. Vehreschild

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Viral genome sequencing to decipher in-hospital SARS-CoV-2 transmission events by Elisabeth Esser, Eva C. Schulte, Alexander Graf, Alexander Karollus, Nicholas H. Smith, Thomas Michler, Stefan Dvoretskii, Angel Angelov, Michael Sonnabend, Silke Peter, Christina Engesser, Aleksandar Radonic, Andrea Thürmer, Max von Kleist, Friedemann Gebhardt, Clarissa Prazeres da Costa, Dirk H. Busch, Maximilian Muenchhoff, Helmut Blum, Oliver T. Keppler, Julien Gagneur, Ulrike Protzer

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