GenomePeek—an online tool for prokaryotic genome and metagenome analysis Bằng Katelyn McNair, Robert A. Edwards

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Growth Score: a single metric to define growth in 96-well phenotype assays Bằng Daniel A. Cuevas, Robert A. Edwards

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Inside or Outside: Detecting the Cellular Location of Bacterial Pathogens Bằng Robert A. Edwards, Stanley R. Maloy

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How Metagenomics Has Transformed Our Understanding of Bacteriophages in Microbiome Research Bằng Laura K. Inglis, Robert A. Edwards

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Increasing DNA Transfer Efficiency by Temporary Inactivation of Host Restriction Bằng Robert A. Edwards, R. Allen Helm, Stanley R. Maloy

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Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes Bằng Ramy Karam Aziz, Ramy Karam Aziz, Ramy Karam Aziz, Bhakti eDwivedi, Sajia eAkhter, Mya eBreitbart, Robert A Edwards, Robert A Edwards

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PRFect: a tool to predict programmed ribosomal frameshifts in prokaryotic and viral genomes Bằng Katelyn McNair, Peter Salamon, Robert A. Edwards, Anca M. Segall

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Towards Predicting Gut Microbial Metabolism: Integration of Flux Balance Analysis and Untargeted Metabolomics Bằng Ellen Kuang, Matthew Marney, Daniel Cuevas, Robert A. Edwards, Erica M. Forsberg

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Organizing the bacterial annotation space with amino acid sequence embeddings Bằng Susanna R. Grigson, Jody C. McKerral, James G. Mitchell, Robert A. Edwards

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Erratum for Cazares et al., “A Novel Group of Promiscuous Podophages Infecting Diverse Gammaproteobacteria from River Communities Exhibits Dynamic Intergenus Host Adaptation” Bằng Daniel Cazares, Adrian Cazares, Wendy Figueroa, Gabriel Guarneros, Robert A. Edwards, Pablo Vinuesa

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A Novel Group of Promiscuous Podophages Infecting Diverse Gammaproteobacteria from River Communities Exhibits Dynamic Intergenus Host Adaptation Bằng Daniel Cazares, Adrian Cazares, Wendy Figueroa, Gabriel Guarneros, Robert A. Edwards, Pablo Vinuesa

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FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares Bằng Genivaldo Gueiros Z. Silva, Daniel A. Cuevas, Bas E. Dutilh, Robert A. Edwards

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Utilizing Amino Acid Composition and Entropy of Potential Open Reading Frames to Identify Protein-Coding Genes Bằng Katelyn McNair, Carol L. Ecale Zhou, Brian Souza, Stephanie Malfatti, Robert A. Edwards

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Kullback Leibler divergence in complete bacterial and phage genomes Bằng Sajia Akhter, Ramy K. Aziz, Mona T. Kashef, Eslam S. Ibrahim, Barbara Bailey, Robert A. Edwards

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Multivariate analysis of functional metagenomes Bằng Elizabeth A. Dinsdale, Robert A. Edwards, Robert A. Edwards, Robert A. Edwards, Barbara eBailey, Imre eTuba, Sajia eAkhter, Katelyn eMcNair, Robert eSchmieder, Naneh eApkarian, Michelle eCreek, Eric eGuan, Mayra eHernandez, Katherine eIsaacs, Chris ePeterson, Todd eRegh, Vadim ePonomarenko

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Host Association and Spatial Proximity Shape but Do Not Constrain Population Structure in the Mutualistic Symbiont Xenorhabdus bovienii Bằng Bhavya Papudeshi, Douglas B. Rusch, David VanInsberghe, Curtis M. Lively, Robert A. Edwards, Farrah Bashey

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Diversification of the Salmonella fimbriae: a model of macro- and microevolution. Bằng Min Yue, Shelley C Rankin, Ryan T Blanchet, James D Nulton, Robert A Edwards, Dieter M Schifferli

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Classification Confidence in Exploratory Learning: A User’s Guide Bằng Peter Salamon, David Salamon, V. Adrian Cantu, Michelle An, Tyler Perry, Robert A. Edwards, Anca M. Segall

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Predicting the capsid architecture of phages from metagenomic data Bằng Diana Y. Lee, Caitlin Bartels, Katelyn McNair, Robert A. Edwards, Manal A. Swairjo, Antoni Luque

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Mathematical modeling links Wnt signaling to emergent patterns of metabolism in colon cancer Bằng Mary Lee, George T Chen, Eric Puttock, Kehui Wang, Robert A Edwards, Marian L Waterman, John Lowengrub

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