Ontologies in quantitative biology: a basis for comparison, integration, and discovery. od Lars J Jensen, Peer Bork

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HOODS: finding context-specific neighborhoods of proteins, chemicals and diseases od Albert Palleja, Lars J. Jensen

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Analysis of Predicted Host–Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism od Yesid Cuesta-Astroz, Alberto Santos, Guilherme Oliveira, Lars J. Jensen

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Extraction of transcript diversity from scientific literature. od Parantu K Shah, Lars J Jensen, Stéphanie Boué, Peer Bork

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Hepatic oxidative stress, genotoxicity and vascular dysfunction in lean or obese Zucker rats. od Mille Løhr, Janne K Folkmann, Majid Sheykhzade, Lars J Jensen, Ali Kermanizadeh, Steffen Loft, Peter Møller

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Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls od Daniel Belstrøm, Rosa R. Jersie-Christensen, David Lyon, Christian Damgaard, Lars J. Jensen, Palle Holmstrup, Jesper V. Olsen

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Predicting kinase activity in angiotensin receptor phosphoproteomes based on sequence-motifs and interactions. od Rikke Bøgebo, Heiko Horn, Jesper V Olsen, Steen Gammeltoft, Lars J Jensen, Jakob L Hansen, Gitte L Christensen

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Assessing systems properties of yeast mitochondria through an interaction map of the organelle. od Fabiana Perocchi, Lars J Jensen, Julien Gagneur, Uwe Ahting, Christian von Mering, Peer Bork, Holger Prokisch, Lars M Steinmetz

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Site-specific characterization of endogenous SUMOylation across species and organs od Ivo A. Hendriks, David Lyon, Dan Su, Niels H. Skotte, Jeremy A. Daniel, Lars J. Jensen, Michael L. Nielsen

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Loss of N-terminal acetyltransferase A activity induces thermally unstable ribosomal proteins and increases their turnover in Saccharomyces cerevisiae od Ulises H. Guzman, Henriette Aksnes, Rasmus Ree, Nicolai Krogh, Magnus E. Jakobsson, Lars J. Jensen, Thomas Arnesen, Jesper V. Olsen

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Systematic association of genes to phenotypes by genome and literature mining. od Jan O Korbel, Tobias Doerks, Lars J Jensen, Carolina Perez-Iratxeta, Szymon Kaczanowski, Sean D Hooper, Miguel A Andrade, Peer Bork

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Using electronic patient records to discover disease correlations and stratify patient cohorts. od Francisco S Roque, Peter B Jensen, Henriette Schmock, Marlene Dalgaard, Massimo Andreatta, Thomas Hansen, Karen Søeby, Søren Bredkjær, Anders Juul, Thomas Werge, Lars J Jensen, Søren Brunak

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The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production od Adrian S. Geissler, Line D. Poulsen, Nadezhda T. Doncheva, Christian Anthon, Stefan E. Seemann, Enrique González-Tortuero, Anne Breüner, Lars J. Jensen, Carsten Hjort, Jeppe Vinther, Jan Gorodkin

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Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer od Chiara Francavilla, Michela Lupia, Kalliopi Tsafou, Alessandra Villa, Katarzyna Kowalczyk, Rosa Rakownikow Jersie-Christensen, Giovanni Bertalot, Stefano Confalonieri, Søren Brunak, Lars J. Jensen, Ugo Cavallaro, Jesper V. Olsen

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Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis od Reza Yarani, Oana Palasca, Oana Palasca, Oana Palasca, Nadezhda T. Doncheva, Nadezhda T. Doncheva, Nadezhda T. Doncheva, Christian Anthon, Christian Anthon, Bartosz Pilecki, Cecilie A. S. Svane, Aashiq H. Mirza, Aashiq H. Mirza, Thomas Litman, Uffe Holmskov, Claus H. Bang-Berthelsen, Claus H. Bang-Berthelsen, Mogens Vilien, Lars J. Jensen, Lars J. Jensen, Jan Gorodkin, Jan Gorodkin, Flemming Pociot, Flemming Pociot, Flemming Pociot, Flemming Pociot

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Quantitative metaproteomics of medieval dental calculus reveals individual oral health status od Rosa R. Jersie-Christensen, Liam T. Lanigan, David Lyon, Meaghan Mackie, Daniel Belstrøm, Christian D. Kelstrup, Anna K. Fotakis, Eske Willerslev, Niels Lynnerup, Lars J. Jensen, Enrico Cappellini, Jesper V. Olsen

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Ten simple rules for getting help from online scientific communities. od Giovanni M Dall'Olio, Jacopo Marino, Michael Schubert, Kevin L Keys, Melanie I Stefan, Colin S Gillespie, Pierre Poulain, Khader Shameer, Robert Sugar, Brandon M Invergo, Lars J Jensen, Jaume Bertranpetit, Hafid Laayouni

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Quantitative proteome comparison of human hearts with those of model organisms. od Nora Linscheid, Alberto Santos, Pi Camilla Poulsen, Robert W Mills, Kirstine Calloe, Ulrike Leurs, Johan Z Ye, Christian Stolte, Morten B Thomsen, Bo H Bentzen, Pia R Lundegaard, Morten S Olesen, Lars J Jensen, Jesper V Olsen, Alicia Lundby

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