Impact of insertion sequences on convergent evolution of Shigella species. by Jane Hawkey, Jonathan M Monk, Helen Billman-Jacobe, Bernhard Palsson, Kathryn E Holt

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Epidemiology and genomic analysis of Klebsiella oxytoca from a single hospital network in Australia by James Stewart, Louise M. Judd, Adam Jenney, Kathryn E. Holt, Kelly L. Wyres, Jane Hawkey

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Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods by Sebastian Duchene, David A. Duchene, Jemma L. Geoghegan, Zoe A. Dyson, Jane Hawkey, Kathryn E. Holt

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Z/I1 Hybrid Virulence Plasmids Carrying Antimicrobial Resistance genes in <i>S.</i> Typhimurium from Australian Food Animal Production by Ethan R. Wyrsch, Jane Hawkey, Louise M. Judd, Ruth Haites, Kathryn E. Holt, Steven P. Djordjevic, Helen Billman-Jacobe

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Trycycler: consensus long-read assemblies for bacterial genomes by Ryan R. Wick, Louise M. Judd, Louise T. Cerdeira, Jane Hawkey, Guillaume Méric, Ben Vezina, Kelly L. Wyres, Kathryn E. Holt

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ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting by Jane Hawkey, Kelly L. Wyres, Louise M. Judd, Taylor Harshegyi, Luke Blakeway, Ryan R. Wick, Adam W. J. Jenney, Kathryn E. Holt

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Bactabolize is a tool for high-throughput generation of bacterial strain-specific metabolic models by Ben Vezina, Stephen C Watts, Jane Hawkey, Helena B Cooper, Louise M Judd, Adam WJ Jenney, Jonathan M Monk, Kathryn E Holt, Kelly L Wyres

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Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs by Rachel M. Colquhoun, Michael B. Hall, Leandro Lima, Leah W. Roberts, Kerri M. Malone, Martin Hunt, Brice Letcher, Jane Hawkey, Sophie George, Louise Pankhurst, Zamin Iqbal

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High-level nitrofurantoin resistance in a clinical isolate of Klebsiella pneumoniae: a comparative genomics and metabolomics analysis by Maytham Hussein, Zetao Sun, Jane Hawkey, Rafah Allobawi, Louise M. Judd, Vincenzo Carbone, Rajnikant Sharma, Varsha Thombare, Mark Baker, Gauri G. Rao, Jian Li, Kathryn E. Holt, Tony Velkov

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Genomic dissection of endemic carbapenem resistance reveals metallo-beta-lactamase dissemination through clonal, plasmid and integron transfer by Nenad Macesic, Jane Hawkey, Ben Vezina, Jessica A. Wisniewski, Hugh Cottingham, Luke V. Blakeway, Taylor Harshegyi, Katherine Pragastis, Gnei Zweena Badoordeen, Amanda Dennison, Denis W. Spelman, Adam W. J. Jenney, Anton Y. Peleg

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Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei by Jane Hawkey, Kalani Paranagama, Kate S. Baker, Rebecca J. Bengtsson, François-Xavier Weill, Nicholas R. Thomson, Stephen Baker, Louise Cerdeira, Zamin Iqbal, Martin Hunt, Danielle J. Ingle, Timothy J. Dallman, Claire Jenkins, Deborah A. Williamson, Kathryn E. Holt

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A Shigella sonnei clone with extensive drug resistance associated with waterborne outbreaks in China by Shaofu Qiu, Kangkang Liu, Chaojie Yang, Ying Xiang, Kaiyuan Min, Kunpeng Zhu, Hongbo Liu, Xinying Du, Mingjuan Yang, Ligui Wang, Yong Sun, Haijian Zhou, Muti Mahe, Jiayong Zhao, Shijun Li, Deshan Yu, Jane Hawkey, Kathryn E. Holt, Stephen Baker, Juntao Yang, Xuebin Xu, Hongbin Song

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Genomic surveillance of antimicrobial resistant bacterial colonisation and infection in intensive care patients by Kelly L. Wyres, Jane Hawkey, Mirianne Mirčeta, Louise M. Judd, Ryan R. Wick, Claire L. Gorrie, Nigel F. Pratt, Jill S. Garlick, Kerrie M. Watson, David V. Pilcher, Steve A. McGloughlin, Iain J. Abbott, Nenad Macesic, Denis W. Spelman, Adam W. J. Jenney, Kathryn E. Holt

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Molecular characterization and descriptive analysis of carbapenemase-producing Gram-negative rod infections in Bogota, Colombia by Elsa D. Ibáñez-Prada, Ingrid G. Bustos, Enrique Gamboa-Silva, Diego F. Josa, Lina Mendez, Yuli V. Fuentes, Cristian C. Serrano-Mayorga, Oscar Baron, Alejandra Ruiz-Cuartas, Edwin Silva, Louise M. Judd, Taylor Harshegyi, Hector F. Africano, Juan Urrego-Reyes, Claudia C. Beltran, Sebastian Medina, Rafael Leal, Andrew J. Stewardson, Kelly L. Wyres, Jane Hawkey, Luis Felipe Reyes

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Attributable mortality and excess length of stay associated with third-generation cephalosporin-resistant Enterobacterales bloodstream infections: a prospective cohort study in Suv... by Michael J. Loftus, Tracey E.M.W. Young-Sharma, Sue J. Lee, Shitanjni Wati, Gnei Z. Badoordeen, Luke V. Blakeway, Sally M.H. Byers, Allen C. Cheng, Ben S. Cooper, Hugh Cottingham, Adam W.J. Jenney, Jane Hawkey, Nenad Macesic, Ravi Naidu, Amitesh Prasad, Vinita Prasad, Litia Tudravu, Timoci Vakatawa, Elke van Gorp, Jessica A. Wisniewski, Eric Rafai, Anton Y. Peleg, Andrew J. Stewardson

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