Nasal microbiome research in ANCA-associated vasculitis: Strengths, limitations, and future directions mā Andreas Kronbichler, Ewan M. Harrison, Josef Wagner

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Local Persistence of Novel MRSA Lineage after Hospital Ward Outbreak, Cambridge, UK, 2011–2013 mā Michelle S. Toleman, Sandra Reuter, Francesc Coll, Ewan M. Harrison, Sharon J. Peacock

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Genomic Analysis of Companion Rabbit Staphylococcus aureus. mā Mark A Holmes, Ewan M Harrison, Elizabeth A Fisher, Elizabeth M Graham, Julian Parkhill, Geoffrey Foster, Gavin K Paterson

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Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England mā Ewan M. Harrison, Francesc Coll, Michelle S. Toleman, Beth Blane, Nicholas M. Brown, M. Estee Török, Julian Parkhill, Sharon J. Peacock

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A Combined Phenotypic-Genotypic Predictive Algorithm for In Vitro Detection of Bicarbonate: β-Lactam Sensitization among Methicillin-Resistant <i>Staphylococcus aureus</i> (MRSA) mā Selvi C. Ersoy, Warren E. Rose, Robin Patel, Richard A. Proctor, Henry F. Chambers, Ewan M. Harrison, Youngju Pak, Arnold S. Bayer

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A Site-Specific Integrative Plasmid Found in Pseudomonas aeruginosa Clinical Isolate HS87 along with A Plasmid Carrying an Aminoglycoside-Resistant Gene. mā Dexi Bi, Yingzhou Xie, Cui Tai, Xiaofei Jiang, Jie Zhang, Ewan M Harrison, Shiru Jia, Zixin Deng, Kumar Rajakumar, Hong-Yu Ou

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Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events mā Dorota Jamrozy, Francesc Coll, Alison E. Mather, Simon R. Harris, Ewan M. Harrison, Alasdair MacGowan, Andreas Karas, Tony Elston, M. Estée Török, Julian Parkhill, Sharon J. Peacock

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A Look into the Melting Pot: The mecC-Harboring Region Is a Recombination Hot Spot in Staphylococcus stepanovicii. mā Torsten Semmler, Ewan M Harrison, Antina Lübke-Becker, Rainer G Ulrich, Lothar H Wieler, Sebastian Guenther, Ivonne Stamm, Anne-Merethe Hanssen, Mark A Holmes, Szilvia Vincze, Birgit Walther

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The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study mā Josef Wagner, Ewan M. Harrison, Marcos Martinez Del Pero, Beth Blane, Gert Mayer, Johannes Leierer, Seerapani Gopaluni, Mark A. Holmes, Julian Parkhill, Sharon J. Peacock, David R. W. Jayne, Andreas Kronbichler

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Incidence and characterisation of methicillin-resistant Staphylococcus aureus (MRSA) from nasal colonisation in participants attending a cattle veterinary conference in the UK. mā Gavin K Paterson, Ewan M Harrison, Emily F Craven, Andreas Petersen, Anders Rhod Larsen, Matthew J Ellington, M Estée Török, Sharon J Peacock, Julian Parkhill, Ruth N Zadoks, Mark A Holmes

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Cryptic susceptibility to penicillin/β-lactamase inhibitor combinations in emerging multidrug-resistant, hospital-adapted Staphylococcus epidermidis lineages mā Xiaoliang Ba, Claire L. Raisen, Olivier Restif, Lina Maria Cavaco, Carina Vingsbo Lundberg, Jean Y. H. Lee, Benjamin P. Howden, Mette D. Bartels, Birgit Strommenger, Ewan M. Harrison, Anders Rhod Larsen, Mark A. Holmes, Jesper Larsen

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Characteristics of <i>Staphylococcus aureus</i> Isolated from Patients in Busia County Referral Hospital, Kenya mā Benear Apollo Obanda, Elizabeth A. J. Cook, Eric M. Fèvre, Lilly Bebora, William Ogara, Shu-Hua Wang, Wondwossen Gebreyes, Ronald Ngetich, Dolphine Wandede, Johnstone Muyodi, Beth Blane, Francesc Coll, Ewan M. Harrison, Sharon J. Peacock, George C. Gitao

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Multi-Drug Resistant <i>Staphylococcus aureus</i> Carriage in Abattoir Workers in Busia, Kenya mā Benear Apollo Obanda, Cheryl L. Gibbons, Eric M. Fèvre, Lilly Bebora, George Gitao, William Ogara, Shu-Hua Wang, Wondwossen Gebreyes, Ronald Ngetich, Beth Blane, Francesc Coll, Ewan M. Harrison, Samuel Kariuki, Sharon J. Peacock, Elizabeth A. J. Cook

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A Shared Population of Epidemic Methicillin-Resistant <named-content content-type="genus-species">Staphylococcus aureus</named-content> 15 Circulates in Humans and Companion Animal... mā Ewan M. Harrison, Lucy A. Weinert, Matthew T. G. Holden, John J. Welch, Katherine Wilson, Fiona J. E. Morgan, Simon R. Harris, Anette Loeffler, Amanda K. Boag, Sharon J. Peacock, Gavin K. Paterson, Andrew S. Waller, Julian Parkhill, Mark A. Holmes

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Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis mā Francesc Coll, PhD, Kathy E Raven, PhD, Gwenan M Knight, PhD, Beth Blane, BSc, Ewan M Harrison, PhD, Danielle Leek, BSc, David A Enoch, FRCPath, Nicholas M Brown, MD, Julian Parkhill, PhD, Sharon J Peacock, PhD

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Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission mā Dinesh Aggarwal, Andrew J. Page, Ulf Schaefer, George M. Savva, Richard Myers, Erik Volz, Nicholas Ellaby, Steven Platt, Natalie Groves, Eileen Gallagher, Niamh M. Tumelty, Thanh Le Viet, Gareth J. Hughes, Cong Chen, Charlie Turner, Sophie Logan, Abbie Harrison, The COVID-19 Genomics UK (COG-UK) Consortium, Sharon J. Peacock, Meera Chand, Ewan M. Harrison

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CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance mā Samuel M. Nicholls, Radoslaw Poplawski, Matthew J. Bull, Anthony Underwood, Michael Chapman, Khalil Abu-Dahab, Ben Taylor, Rachel M. Colquhoun, Will P. M. Rowe, Ben Jackson, Verity Hill, Áine O’Toole, Sara Rey, Joel Southgate, Roberto Amato, Rich Livett, Sónia Gonçalves, Ewan M. Harrison, Sharon J. Peacock, David M. Aanensen, Andrew Rambaut, Thomas R. Connor, Nicholas J. Loman, The COVID-19 Genomics UK (COG-UK) Consortium

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Genomic epidemiology of COVID-19 in care homes in the east of England mā William L Hamilton, Gerry Tonkin-Hill, Emily R Smith, Dinesh Aggarwal, Charlotte J Houldcroft, Ben Warne, Luke W Meredith, Myra Hosmillo, Aminu S Jahun, Martin D Curran, Surendra Parmar, Laura G Caller, Sarah L Caddy, Fahad A Khokhar, Anna Yakovleva, Grant Hall, Theresa Feltwell, Malte L Pinckert, Iliana Georgana, Yasmin Chaudhry, Colin S Brown, Sonia Gonçalves, Roberto Amato, Ewan M Harrison, Nicholas M Brown, Mathew A Beale, Michael Spencer Chapman, David K Jackson, Ian Johnston, Alex Alderton, John Sillitoe, Cordelia Langford, Gordon Dougan, Sharon J Peacock, Dominic P Kwiatowski, Ian G Goodfellow, M Estee Torok, COVID-19 Genomics Consortium UK

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Patterns of within-host genetic diversity in SARS-CoV-2 mā Gerry Tonkin-Hill, Inigo Martincorena, Roberto Amato, Andrew RJ Lawson, Moritz Gerstung, Ian Johnston, David K Jackson, Naomi Park, Stefanie V Lensing, Michael A Quail, Sónia Gonçalves, Cristina Ariani, Michael Spencer Chapman, William L Hamilton, Luke W Meredith, Grant Hall, Aminu S Jahun, Yasmin Chaudhry, Myra Hosmillo, Malte L Pinckert, Iliana Georgana, Anna Yakovleva, Laura G Caller, Sarah L Caddy, Theresa Feltwell, Fahad A Khokhar, Charlotte J Houldcroft, Martin D Curran, Surendra Parmar, The COVID-19 Genomics UK (COG-UK) Consortium, Alex Alderton, Rachel Nelson, Ewan M Harrison, John Sillitoe, Stephen D Bentley, Jeffrey C Barrett, M Estee Torok, Ian G Goodfellow, Cordelia Langford, Dominic Kwiatkowski, Wellcome Sanger Institute COVID-19 Surveillance Team

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Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission mā Dinesh Aggarwal, Ben Warne, Aminu S. Jahun, William L. Hamilton, Thomas Fieldman, Louis du Plessis, Verity Hill, Beth Blane, Emmeline Watkins, Elizabeth Wright, Grant Hall, Catherine Ludden, Richard Myers, Myra Hosmillo, Yasmin Chaudhry, Malte L. Pinckert, Iliana Georgana, Rhys Izuagbe, Danielle Leek, Olisaeloka Nsonwu, Gareth J. Hughes, Simon Packer, Andrew J. Page, Marina Metaxaki, Stewart Fuller, Gillian Weale, Jon Holgate, Christopher A. Brown, The Cambridge Covid-19 testing Centre, University of Cambridge Asymptomatic COVID-19 Screening Programme Consortium, The COVID-19 Genomics UK (COG-UK) Consortium, Rob Howes, Duncan McFarlane, Gordon Dougan, Oliver G. Pybus, Daniela De Angelis, Patrick H. Maxwell, Sharon J. Peacock, Michael P. Weekes, Chris Illingworth, Ewan M. Harrison, Nicholas J. Matheson, Ian G. Goodfellow

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