Correcting for batch effects in case-control microbiome studies. od Sean M Gibbons, Claire Duvallet, Eric J Alm

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dbOTU3: A new implementation of distribution-based OTU calling. od Scott W Olesen, Claire Duvallet, Eric J Alm

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Assessment of sewer connectivity in the United States and its implications for equity in wastewater-based epidemiology. od QinQin Yu, Scott W Olesen, Claire Duvallet, Yonatan H Grad

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Assessment of sewer connectivity in the United States and its implications for equity in wastewater-based epidemiology od QinQin Yu, Scott W. Olesen, Claire Duvallet, Yonatan H. Grad

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Meta-analysis of gut microbiome studies identifies disease-specific and shared responses od Claire Duvallet, Sean M. Gibbons, Thomas Gurry, Rafael A. Irizarry, Eric J. Alm

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Framework for rational donor selection in fecal microbiota transplant clinical trials. od Claire Duvallet, Caroline Zellmer, Pratik Panchal, Shrish Budree, Majdi Osman, Eric J Alm

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Aerodigestive sampling reveals altered microbial exchange between lung, oropharyngeal, and gastric microbiomes in children with impaired swallow function. od Claire Duvallet, Kara Larson, Scott Snapper, Sonia Iosim, Ann Lee, Katherine Freer, Kara May, Eric Alm, Rachel Rosen

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A practical guide to methods controlling false discoveries in computational biology od Keegan Korthauer, Patrick K. Kimes, Claire Duvallet, Alejandro Reyes, Ayshwarya Subramanian, Mingxiang Teng, Chinmay Shukla, Eric J. Alm, Stephanie C. Hicks

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Wastewater network infrastructure in public health: Applications and learnings from the COVID-19 pandemic. od Nour Sharara, Noriko Endo, Claire Duvallet, Newsha Ghaeli, Mariana Matus, Jennings Heussner, Scott W Olesen, Eric J Alm, Peter R Chai, Timothy B Erickson

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MicrobiomeCensus estimates human population sizes from wastewater samples based on inter-individual variability in gut microbiomes. od Lin Zhang, Likai Chen, Xiaoqian Annie Yu, Claire Duvallet, Siavash Isazadeh, Chengzhen Dai, Shinkyu Park, Katya Frois-Moniz, Fabio Duarte, Carlo Ratti, Eric J Alm, Fangqiong Ling

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SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases od Fuqing Wu, Jianbo Zhang, Amy Xiao, Xiaoqiong Gu, Wei Lin Lee, Federica Armas, Kathryn Kauffman, William Hanage, Mariana Matus, Newsha Ghaeli, Noriko Endo, Claire Duvallet, Mathilde Poyet, Katya Moniz, Alex D. Washburne, Timothy B. Erickson, Peter R. Chai, Janelle Thompson, Eric J. Alm

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Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques od Jasmijn A. Baaijens, Alessandro Zulli, Isabel M. Ott, Ioanna Nika, Mart J. van der Lugt, Mary E. Petrone, Tara Alpert, Joseph R. Fauver, Chaney C. Kalinich, Chantal B. F. Vogels, Mallery I. Breban, Claire Duvallet, Kyle A. McElroy, Newsha Ghaeli, Maxim Imakaev, Malaika F. Mckenzie-Bennett, Keith Robison, Alex Plocik, Rebecca Schilling, Martha Pierson, Rebecca Littlefield, Michelle L. Spencer, Birgitte B. Simen, Yale SARS-CoV-2 Genomic Surveillance Initiative, William P. Hanage, Nathan D. Grubaugh, Jordan Peccia, Michael Baym

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