Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set. por Matthew Hall, Mark Woolhouse, Andrew Rambaut

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Correction: MERS-CoV spillover at the camel-human interface por Gytis Dudas, Luiz Max Carvalho, Andrew Rambaut, Trevor Bedford

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MERS-CoV spillover at the camel-human interface por Gytis Dudas, Luiz Max Carvalho, Andrew Rambaut, Trevor Bedford

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Bayesian phylogeography finds its roots. por Philippe Lemey, Andrew Rambaut, Alexei J Drummond, Marc A Suchard

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Relaxed phylogenetics and dating with confidence. por Alexei J Drummond, Simon Y W Ho, Matthew J Phillips, Andrew Rambaut

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Episodic sexual transmission of HIV revealed by molecular phylodynamics. por Fraser Lewis, Gareth J Hughes, Andrew Rambaut, Anton Pozniak, Andrew J Leigh Brown

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Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences por Áine O’Toole, Oliver G. Pybus, Michael E. Abram, Elizabeth J. Kelly, Andrew Rambaut

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Reconstructing Geographical Movements and Host Species Transitions of Foot-and-Mouth Disease Virus Serotype SAT 2 por Matthew D. Hall, Nick J. Knowles, Jemma Wadsworth, Andrew Rambaut, Mark E. J. Woolhouse

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Phylodynamic reconstruction reveals norovirus GII.4 epidemic expansions and their molecular determinants. por J Joukje Siebenga, Philippe Lemey, Sergei L Kosakovsky Pond, Andrew Rambaut, Harry Vennema, Marion Koopmans

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The evolutionary analysis of emerging low frequency HIV-1 CXCR4 using variants through time--an ultra-deep approach. por John Archer, Andrew Rambaut, Bruce E Taillon, P Richard Harrigan, Marilyn Lewis, David L Robertson

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Phylogenetic Analysis of a Human Isolate from the 2000 Israel West Nile virus Epidemic por Thomas Briese, Andrew Rambaut, Melissa Pathmajeyan, Jihad Bishara, Miriam Weinberger, Silvio Pitlik, W. Ian Lipkin

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Making genomic surveillance deliver: A lineage classification and nomenclature system to inform rabies elimination. por Kathryn Campbell, Robert J Gifford, Joshua Singer, Verity Hill, Aine O'Toole, Andrew Rambaut, Katie Hampson, Kirstyn Brunker

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Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak por Simon Dellicour, Guy Baele, Gytis Dudas, Nuno R. Faria, Oliver G. Pybus, Marc A. Suchard, Andrew Rambaut, Philippe Lemey

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Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics. por Philippe Lemey, Sergei L Kosakovsky Pond, Alexei J Drummond, Oliver G Pybus, Beth Shapiro, Helena Barroso, Nuno Taveira, Andrew Rambaut

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Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom. por Gareth J Hughes, Esther Fearnhill, David Dunn, Samantha J Lycett, Andrew Rambaut, Andrew J Leigh Brown, UK HIV Drug Resistance Collaboration

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BEAST 2: a software platform for Bayesian evolutionary analysis. por Remco Bouckaert, Joseph Heled, Denise Kühnert, Tim Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A Suchard, Andrew Rambaut, Alexei J Drummond

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The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates. por Bram Vrancken, Andrew Rambaut, Marc A Suchard, Alexei Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey

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Integrating influenza antigenic dynamics with molecular evolution por Trevor Bedford, Marc A Suchard, Philippe Lemey, Gytis Dudas, Victoria Gregory, Alan J Hay, John W McCauley, Colin A Russell, Derek J Smith, Andrew Rambaut

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Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2. por Philippe Lemey, Andrew Rambaut, Trevor Bedford, Nuno Faria, Filip Bielejec, Guy Baele, Colin A Russell, Derek J Smith, Oliver G Pybus, Dirk Brockmann, Marc A Suchard

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Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building por Martha I. Nelson, James O. Lloyd-Smith, Lone Simonsen, Andrew Rambaut, Edward C. Holmes, Gerardo Chowell, Mark A. Miller, David J. Spiro, Bryan Grenfell, Cécile Viboud

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