Transcription Factor NKX6.3 Sheds Light on Gastric Cancer Progression за авторством Alison C. Testa, Alistair R.R. Forrest

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Human genetics and genomics meetings going virtual: practical lessons learned from two international meetings in early 2020 за авторством Alistair R. R. Forrest, Gabriela M. Repetto, Juergen K. V. Reichardt

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The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome. за авторством Laurence D Hurst, Avazeh T Ghanbarian, Alistair R R Forrest, FANTOM consortium, Lukasz Huminiecki

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Predicting cell-to-cell communication networks using NATMI за авторством Rui Hou, Elena Denisenko, Huan Ting Ong, Jordan A. Ramilowski, Alistair R. R. Forrest

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MiR-107 and MiR-185 can induce cell cycle arrest in human non small cell lung cancer cell lines. за авторством Yukari Takahashi, Alistair R R Forrest, Emi Maeno, Takehiro Hashimoto, Carsten O Daub, Jun Yasuda

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Improved CRISPR/Cas9 gene editing in primary human myoblasts using low confluency cultures on Matrigel за авторством Hayley Goullée, Rhonda L. Taylor, Alistair R. R. Forrest, Nigel G. Laing, Gianina Ravenscroft, Joshua S. Clayton

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Correction: MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments за авторством Hamid Alinejad-Rokny, Rassa Ghavami Modegh, Hamid R. Rabiee, Ehsan Ramezani Sarbandi, Narges Rezaie, Kin Tung Tam, Alistair R. R. Forrest

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Correction: MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments. за авторством Hamid Alinejad-Rokny, Rassa Ghavami Modegh, Hamid R Rabiee, Ehsan Ramezani Sarbandi, Narges Rezaie, Kin Tung Tam, Alistair R R Forrest

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MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments. за авторством Hamid Alinejad-Rokny, Rassa Ghavami Modegh, Hamid R Rabiee, Ehsan Ramezani Sarbandi, Narges Rezaie, Kin Tung Tam, Alistair R R Forrest

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Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells. за авторством Erik Arner, Alistair R R Forrest, Anna Ehrlund, Niklas Mejhert, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Jurga Laurencikiene, Mikael Rydén, Peter Arner, FANTOM Consortium

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Mapping mammalian cell-type-specific transcriptional regulatory networks using KD-CAGE and ChIP-seq data in the TC-YIK cell line. за авторством Marina eLizio, Marina eLizio, Yuri eIshizu, Yuri eIshizu, Masayoshi eItoh, Masayoshi eItoh, Masayoshi eItoh, Timo eLassmann, Timo eLassmann, Akira eHasegawa, Akira eHasegawa, Atsutaka eKubosaki, Jessica eSeverin, Jessica eSeverin, Hideya eKawaji, Hideya eKawaji, Hideya eKawaji, Yukio eNakamura, Harukazu eSuzuki, Harukazu eSuzuki, Yoshihide eHayashizaki, Yoshihide eHayashizaki, Piero eCarninci, Piero eCarninci, Alistair R R Forrest, Alistair R R Forrest, Alistair R R Forrest

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Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli за авторством Annalaura Vacca, Masayoshi Itoh, Hideya Kawaji, Erik Arner, Timo Lassmann, Carsten O. Daub, Piero Carninci, Alistair R. R. Forrest, Yoshihide Hayashizaki, Stuart Aitken, Colin A. Semple

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Correction: Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human за авторством Jordan A. Ramilowski, Tatyana Goldberg, Jayson Harshbarger, Edda Kloppmann, Marina Lizio, Venkata P. Satagopam, Masayoshi Itoh, Hideya Kawaji, Piero Carninci, Burkhard Rost, Alistair R. R. Forrest

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Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows за авторством Elena Denisenko, Belinda B. Guo, Matthew Jones, Rui Hou, Leanne de Kock, Timo Lassmann, Daniel Poppe, Olivier Clément, Rebecca K. Simmons, Ryan Lister, Alistair R. R. Forrest

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Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer. за авторством Masayoshi Itoh, Miki Kojima, Sayaka Nagao-Sato, Eri Saijo, Timo Lassmann, Mutsumi Kanamori-Katayama, Ai Kaiho, Marina Lizio, Hideya Kawaji, Piero Carninci, Alistair R R Forrest, Yoshihide Hayashizaki

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LRRN4 and UPK3B are markers of primary mesothelial cells. за авторством Mutsumi Kanamori-Katayama, Ai Kaiho, Yuri Ishizu, Yuko Okamura-Oho, Okio Hino, Masaaki Abe, Takumi Kishimoto, Hisahiko Sekihara, Yukio Nakamura, Harukazu Suzuki, Alistair R R Forrest, Yoshihide Hayashizaki

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Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage. за авторством Daniel Carbajo, Shigeyuki Magi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Erik Arner, Alistair R R Forrest, Piero Carninci, Yoshihide Hayashizaki, Carsten O Daub, FANTOM consortium, Mariko Okada-Hatakeyama, Jessica C Mar

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Correction to: Relatively frequent switching of transcription start sites during cerebellar development за авторством Peter Zhang, Emmanuel Dimont, Thomas Ha, Douglas J. Swanson, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, the FANTOM Consortium, Piero Carninci, Yoshihide Hayashizaki, Alistair R. R. Forrest, Winston Hide, Dan Goldowitz

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Systematic analysis of transcription start sites in avian development. за авторством Marina Lizio, Ruslan Deviatiiarov, Hiroki Nagai, Laura Galan, Erik Arner, Masayoshi Itoh, Timo Lassmann, Takeya Kasukawa, Akira Hasegawa, Marian A Ros, Yoshihide Hayashizaki, Piero Carninci, Alistair R R Forrest, Hideya Kawaji, Oleg Gusev, Guojun Sheng

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Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response. за авторством Stuart Aitken, Shigeyuki Magi, Ahmad M N Alhendi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O Daub, Erik Arner, Piero Carninci, Alistair R R Forrest, Yoshihide Hayashizaki, FANTOM Consortium, Levon M Khachigian, Mariko Okada-Hatakeyama, Colin A Semple

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